Wall clock time and date at job start Mon Mar 30 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.47158 * 2 1 4 4 C 1.52995 * 109.47350 * 119.99899 * 2 1 3 5 5 H 1.09002 * 110.37093 * 176.90005 * 4 2 1 6 6 C 1.54383 * 110.41280 * 299.25479 * 4 2 1 7 7 H 1.08995 * 110.32594 * 23.74754 * 6 4 2 8 8 C 1.50702 * 110.32182 * 261.64331 * 6 4 2 9 9 H 1.07997 * 119.99763 * 1.42199 * 8 6 4 10 10 C 1.37882 * 119.99783 * 181.70376 * 8 6 4 11 11 N 1.31513 * 119.99850 * 359.72199 * 10 8 6 12 12 Si 1.86800 * 119.99682 * 179.72312 * 10 8 6 13 13 H 1.48505 * 109.46964 * 89.99633 * 12 10 8 14 14 H 1.48502 * 109.46947 * 209.99406 * 12 10 8 15 15 H 1.48493 * 109.47315 * 329.99817 * 12 10 8 16 16 C 1.54261 * 105.14934 * 142.69822 * 6 4 2 17 17 C 1.54608 * 104.94947 * 0.07156 * 16 6 4 18 18 N 1.48558 * 110.50860 * 54.48280 * 4 2 1 19 19 C 1.46897 * 111.00225 * 82.13214 * 18 4 2 20 20 H 1.08997 * 109.46926 * 306.00868 * 1 2 3 21 21 H 1.09000 * 109.46953 * 66.00447 * 1 2 3 22 22 H 1.08996 * 109.47200 * 186.00267 * 1 2 3 23 23 H 1.08997 * 109.47318 * 240.00658 * 2 1 3 24 24 H 1.08997 * 109.47106 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47039 * 300.00026 * 3 2 1 26 26 H 1.09004 * 109.46714 * 60.00363 * 3 2 1 27 27 H 0.96998 * 119.99657 * 180.02562 * 11 10 8 28 28 H 1.08993 * 110.32779 * 118.94783 * 16 6 4 29 29 H 1.09003 * 110.31935 * 241.15652 * 16 6 4 30 30 H 1.08998 * 110.36573 * 217.31233 * 17 16 6 31 31 H 1.09003 * 110.55527 * 94.92685 * 17 16 6 32 32 H 1.09001 * 109.47038 * 64.74981 * 19 18 4 33 33 H 1.08994 * 109.47681 * 184.74788 * 19 18 4 34 34 H 1.09004 * 109.46983 * 304.75305 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1285 -0.7778 1.2368 6 6 1.5529 0.0004 2.5241 7 1 0.6523 0.5765 2.3124 8 6 2.6351 0.9010 3.0616 9 1 3.5779 0.9821 2.5413 10 6 2.4234 1.6170 4.2208 11 7 1.2752 1.5181 4.8544 12 14 3.7676 2.7275 4.8912 13 1 3.6172 4.0888 4.3171 14 1 3.6584 2.7992 6.3705 15 1 5.0957 2.1773 4.5189 16 6 1.2439 -1.1261 3.5317 17 6 1.5730 -2.4359 2.7790 18 7 1.4515 -2.0821 1.3413 19 6 2.1907 -3.0334 0.5008 20 1 -0.3633 0.6042 0.8313 21 1 -0.3633 0.4179 -0.9389 22 1 -0.3633 -1.0220 0.1075 23 1 1.8934 -0.5137 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8901 27 1 1.1262 2.0221 5.6696 28 1 1.8748 -1.0276 4.4150 29 1 0.1910 -1.1039 3.8131 30 1 0.8564 -3.2142 3.0410 31 1 2.5879 -2.7628 3.0056 32 1 3.2061 -3.1422 0.8820 33 1 1.6897 -4.0012 0.5204 34 1 2.2250 -2.6627 -0.5237 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107222362.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:03 Heat of formation + Delta-G solvation = -11.943154 kcal Electronic energy + Delta-G solvation = -13573.389466 eV Core-core repulsion = 11505.522177 eV Total energy + Delta-G solvation = -2067.867290 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.60482 -33.89691 -33.08844 -30.45286 -27.31583 -26.31730 -25.40594 -23.54282 -21.29169 -19.85106 -17.88171 -16.36937 -15.01850 -14.65927 -14.15098 -13.68867 -13.63085 -12.80409 -12.61158 -12.11081 -11.98711 -11.49146 -11.19911 -10.97735 -10.91338 -10.66206 -10.50437 -10.23930 -10.18482 -10.14731 -9.87298 -9.54646 -8.90776 -8.61229 -8.33163 -7.70742 -5.98005 -4.00107 3.31170 3.38431 3.41128 4.44827 4.82823 5.34265 5.62460 5.65881 5.78728 5.90289 5.97435 6.10985 6.17353 6.22763 6.38944 6.39549 6.46017 6.53723 6.71519 6.75999 6.80713 6.94874 7.13759 7.20062 7.23314 7.41454 7.62618 7.74355 7.84536 7.95039 8.09026 8.52768 9.02396 9.62702 11.11213 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036345 B = 0.013351 C = 0.011577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.205903 B = 2096.643445 C = 2418.053730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.141 4.141 4 C 0.069 3.931 5 H 0.039 0.961 6 C 0.055 3.945 7 H 0.043 0.957 8 C -0.508 4.508 9 H 0.053 0.947 10 C 0.062 3.938 11 N -0.887 5.887 12 Si 0.885 3.115 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.276 1.276 16 C -0.095 4.095 17 C 0.031 3.969 18 N -0.515 5.515 19 C 0.016 3.984 20 H 0.059 0.941 21 H 0.032 0.968 22 H 0.062 0.938 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.259 0.741 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.057 0.943 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 -4.394 -6.385 7.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.039 4.039 5 H 0.057 0.943 6 C 0.036 3.964 7 H 0.061 0.939 8 C -0.546 4.546 9 H 0.071 0.929 10 C -0.139 4.139 11 N -0.526 5.526 12 Si 0.713 3.287 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.201 1.201 16 C -0.134 4.134 17 C -0.097 4.097 18 N -0.239 5.239 19 C -0.133 4.133 20 H 0.078 0.922 21 H 0.051 0.949 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.137 -4.359 -6.410 7.753 hybrid contribution 1.700 0.504 0.714 1.911 sum 1.563 -3.856 -5.697 7.054 Atomic orbital electron populations 1.21738 0.95370 1.02298 0.99919 1.20851 0.96159 0.95717 0.96300 1.21812 1.00310 0.96096 1.01658 1.22901 0.95770 0.87763 0.97419 0.94254 1.19448 0.96818 0.92231 0.87855 0.93931 1.21188 1.00148 1.25014 1.08280 0.92873 1.24940 0.95318 0.96767 0.96890 1.69982 1.22936 1.41717 1.17954 0.86710 0.82578 0.81291 0.78115 1.20731 1.21366 1.20080 1.22274 0.99783 0.92306 0.98998 1.23227 0.98269 0.99544 0.88675 1.65268 1.50172 1.02578 1.05872 1.22445 0.95861 0.96869 0.98151 0.92208 0.94921 0.91894 0.93714 0.93670 0.94584 0.90226 0.93128 0.91717 0.93711 0.92260 0.95242 0.96237 0.92465 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.74 37.16 0.32 -2.15 16 2 C -0.07 -1.34 2.82 -90.62 -0.26 -1.60 16 3 C -0.14 -2.65 8.57 37.16 0.32 -2.34 16 4 C 0.07 1.46 1.68 -66.07 -0.11 1.35 16 5 H 0.04 0.88 7.55 -51.93 -0.39 0.49 16 6 C 0.06 1.35 1.64 -90.39 -0.15 1.20 16 7 H 0.04 1.13 5.63 -51.93 -0.29 0.84 16 8 C -0.51 -13.51 7.07 -34.44 -0.24 -13.76 16 9 H 0.05 1.42 7.57 -52.49 -0.40 1.02 16 10 C 0.06 1.70 5.11 -17.82 -0.09 1.61 16 11 N -0.89 -25.18 12.45 55.43 0.69 -24.49 16 12 Si 0.88 21.13 29.54 -169.99 -5.02 16.11 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C -0.09 -2.25 5.81 -25.23 -0.15 -2.40 16 17 C 0.03 0.62 6.50 -2.06 -0.01 0.60 16 18 N -0.52 -10.04 4.31 -230.20 -0.99 -11.03 16 19 C 0.02 0.26 9.52 60.06 0.57 0.83 16 20 H 0.06 1.19 6.37 -51.93 -0.33 0.86 16 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 1.15 7.31 -51.93 -0.38 0.77 16 23 H 0.04 0.78 7.48 -51.93 -0.39 0.39 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.71 6.41 -51.93 -0.33 1.38 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.06 1.67 7.32 -51.93 -0.38 1.29 16 29 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.58 7.83 -51.93 -0.41 0.18 16 32 H 0.02 0.31 7.89 -51.93 -0.41 -0.10 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.90 7.37 -51.93 -0.38 0.52 16 LS Contribution 260.96 15.07 3.93 3.93 Total: -1.00 -27.28 260.96 -6.95 -34.23 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.76 Total: -2.10 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 0.20 Total: -16.65 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.30 Total: -35.52 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.28 -6.95 -34.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107222362.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.287 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds