Wall clock time and date at job start Mon Mar 30 2020 02:18:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52998 * 109.47144 * 2 1
4 4 C 1.53002 * 109.46891 * 119.99745 * 2 1 3
5 5 H 1.09002 * 110.62873 * 300.70143 * 4 2 1
6 6 C 1.55142 * 110.70341 * 63.80750 * 4 2 1
7 7 C 1.55380 * 101.43737 * 154.11367 * 6 4 2
8 8 N 1.47844 * 104.83918 * 322.95685 * 7 6 4
9 9 C 1.46900 * 110.99982 * 146.36889 * 8 7 6
10 10 C 1.50705 * 109.47371 * 49.15246 * 9 8 7
11 11 H 1.08003 * 119.99905 * 0.02562 * 10 9 8
12 12 C 1.37871 * 119.99980 * 180.02562 * 10 9 8
13 13 N 1.31511 * 120.00431 * 359.97438 * 12 10 9
14 14 Si 1.86799 * 119.99825 * 180.02562 * 12 10 9
15 15 H 1.48504 * 109.47499 * 89.99824 * 14 12 10
16 16 H 1.48500 * 109.47306 * 209.99809 * 14 12 10
17 17 H 1.48497 * 109.47102 * 329.99868 * 14 12 10
18 18 C 1.47443 * 108.56494 * 24.09964 * 8 7 6
19 19 H 1.09005 * 109.46670 * 60.00125 * 1 2 3
20 20 H 1.08997 * 109.47124 * 179.97438 * 1 2 3
21 21 H 1.08998 * 109.47272 * 300.00538 * 1 2 3
22 22 H 1.08998 * 109.47272 * 239.99462 * 2 1 3
23 23 H 1.09001 * 109.46969 * 179.97438 * 3 2 1
24 24 H 1.09005 * 109.47235 * 299.99528 * 3 2 1
25 25 H 1.08998 * 109.47219 * 60.00073 * 3 2 1
26 26 H 1.09003 * 110.98867 * 272.29941 * 6 4 2
27 27 H 1.08996 * 110.99420 * 36.12001 * 6 4 2
28 28 H 1.08999 * 110.35214 * 204.10929 * 7 6 4
29 29 H 1.09007 * 110.44781 * 81.84802 * 7 6 4
30 30 H 1.08999 * 109.47331 * 169.15585 * 9 8 7
31 31 H 1.09000 * 109.47057 * 289.15853 * 9 8 7
32 32 H 0.97003 * 120.00716 * 180.02562 * 13 12 10
33 33 H 1.08997 * 109.88254 * 239.60085 * 18 8 7
34 34 H 1.09003 * 109.88840 * 118.42215 * 18 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 1 1.6769 -0.2294 2.1518
6 6 1.6189 -2.2143 1.2310
7 6 2.7265 -2.8576 2.1105
8 7 3.9596 -2.1175 1.7679
9 6 4.8412 -1.9937 2.9364
10 6 5.0074 -3.3436 3.5856
11 1 4.5085 -4.2072 3.1712
12 6 5.7965 -3.4761 4.7084
13 7 6.4045 -2.4247 5.2127
14 14 6.0031 -5.1495 5.5125
15 1 7.1703 -5.8457 4.9140
16 1 6.2255 -4.9741 6.9702
17 1 4.7778 -5.9590 5.2926
18 6 3.5815 -0.7905 1.2482
19 1 -0.3633 0.5138 -0.8901
20 1 -0.3633 -1.0276 -0.0005
21 1 -0.3634 0.5139 0.8899
22 1 1.8934 -0.5139 -0.8899
23 1 3.1300 1.4424 0.0005
24 1 1.6768 1.9563 -0.8901
25 1 1.6767 1.9563 0.8900
26 1 0.6338 -2.3476 1.6783
27 1 1.6431 -2.6144 0.2174
28 1 2.8379 -3.9142 1.8670
29 1 2.4920 -2.7354 3.1680
30 1 5.8149 -1.6208 2.6191
31 1 4.4012 -1.2986 3.6515
32 1 6.9599 -2.5179 6.0024
33 1 3.9575 -0.6693 0.2324
34 1 3.9883 -0.0105 1.8920
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000108286261.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:18:25
Heat of formation + Delta-G solvation = -20.181501 kcal
Electronic energy + Delta-G solvation = -12898.474527 eV
Core-core repulsion = 10830.249996 eV
Total energy + Delta-G solvation = -2068.224531 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-38.70067 -35.14143 -32.65644 -30.14539 -28.33629 -26.75584 -26.01207 -22.55263
-21.46179 -19.87741 -19.27216 -16.31633 -15.34311 -14.84285 -14.56199 -13.98203
-13.24620 -12.99087 -12.85229 -12.53362 -12.31673 -12.10281 -11.45381 -11.41379
-11.32391 -10.91630 -10.73208 -10.63338 -10.33591 -10.21961 -10.11554 -10.03019
-9.68900 -9.03999 -8.44901 -7.11861 -6.01648 -4.02939 3.32934 3.38568
3.42162 4.44470 4.92199 4.94236 5.00740 5.20275 5.33690 5.51615
5.58563 5.68794 5.71896 5.80221 5.92478 5.97675 6.03531 6.15048
6.25612 6.30438 6.31858 6.44761 6.55533 6.67449 6.78525 6.89700
7.30303 7.47676 7.81686 8.07089 8.29237 8.59619 9.05278 9.61524
11.09774
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.069317 B = 0.007750 C = 0.007229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 403.842097 B = 3612.156547 C = 3872.413781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.085 4.085
3 C -0.148 4.148
4 C -0.104 4.104
5 H 0.069 0.931
6 C -0.127 4.127
7 C 0.061 3.939
8 N -0.533 5.533
9 C 0.187 3.813
10 C -0.513 4.513
11 H 0.063 0.937
12 C 0.055 3.945
13 N -0.898 5.898
14 Si 0.897 3.103
15 H -0.280 1.280
16 H -0.287 1.287
17 H -0.274 1.274
18 C 0.049 3.951
19 H 0.049 0.951
20 H 0.055 0.945
21 H 0.051 0.949
22 H 0.070 0.930
23 H 0.058 0.942
24 H 0.049 0.951
25 H 0.051 0.949
26 H 0.062 0.938
27 H 0.066 0.934
28 H 0.067 0.933
29 H 0.047 0.953
30 H 0.030 0.970
31 H -0.009 1.009
32 H 0.261 0.739
33 H 0.062 0.938
34 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.984 4.308 -8.162 13.596
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.104 4.104
3 C -0.205 4.205
4 C -0.123 4.123
5 H 0.087 0.913
6 C -0.165 4.165
7 C -0.067 4.067
8 N -0.258 5.258
9 C 0.062 3.938
10 C -0.552 4.552
11 H 0.081 0.919
12 C -0.146 4.146
13 N -0.538 5.538
14 Si 0.725 3.275
15 H -0.206 1.206
16 H -0.213 1.213
17 H -0.199 1.199
18 C -0.080 4.080
19 H 0.068 0.932
20 H 0.074 0.926
21 H 0.070 0.930
22 H 0.088 0.912
23 H 0.077 0.923
24 H 0.068 0.932
25 H 0.070 0.930
26 H 0.080 0.920
27 H 0.085 0.915
28 H 0.085 0.915
29 H 0.065 0.935
30 H 0.048 0.952
31 H 0.009 0.991
32 H 0.071 0.929
33 H 0.081 0.919
34 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -9.564 4.090 -8.376 13.355
hybrid contribution -0.148 -0.361 1.241 1.301
sum -9.712 3.729 -7.135 12.615
Atomic orbital electron populations
1.21840 0.95694 1.01609 1.01112 1.21093 0.95223 0.95968 0.98077
1.21858 1.01488 0.96050 1.01096 1.22446 0.96655 0.95842 0.97392
0.91304 1.22906 0.98353 0.94853 1.00433 1.22856 0.88114 0.98330
0.97419 1.63666 1.14373 1.13156 1.34580 1.19909 0.91764 0.96862
0.85288 1.21257 1.29130 0.94405 1.10408 0.91863 1.24997 0.95678
0.96843 0.97059 1.69961 1.31699 1.29062 1.23029 0.86508 0.78555
0.84089 0.78330 1.20580 1.21301 1.19867 1.22840 0.92840 0.92364
0.99948 0.93230 0.92618 0.92996 0.91188 0.92311 0.93211 0.92962
0.91972 0.91494 0.91460 0.93458 0.95194 0.99148 0.92935 0.91936
0.93664
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.59 9.01 37.16 0.33 -1.25 16
2 C -0.08 -1.07 2.29 -90.62 -0.21 -1.28 16
3 C -0.15 -1.73 9.00 37.16 0.33 -1.39 16
4 C -0.10 -1.62 2.47 -88.80 -0.22 -1.84 16
5 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
6 C -0.13 -2.03 5.59 -24.33 -0.14 -2.16 16
7 C 0.06 1.24 5.41 -2.04 -0.01 1.23 16
8 N -0.53 -12.15 5.31 -232.37 -1.23 -13.38 16
9 C 0.19 5.09 4.59 -4.97 -0.02 5.07 16
10 C -0.51 -14.79 8.35 -34.44 -0.29 -15.07 16
11 H 0.06 1.79 6.67 -52.48 -0.35 1.44 16
12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16
13 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16
14 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16
15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
17 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16
18 C 0.05 0.92 5.50 -2.84 -0.02 0.90 16
19 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
20 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16
21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
22 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16
23 H 0.06 0.72 7.22 -51.93 -0.37 0.35 16
24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
26 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16
27 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16
28 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16
29 H 0.05 1.05 7.55 -51.93 -0.39 0.66 16
30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16
31 H -0.01 -0.27 7.96 -51.93 -0.41 -0.68 16
32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
33 H 0.06 1.11 7.62 -51.93 -0.40 0.71 16
34 H 0.04 0.89 7.49 -51.93 -0.39 0.50 16
LS Contribution 268.13 15.07 4.04 4.04
Total: -1.00 -29.97 268.13 -7.84 -37.81
By element:
Atomic # 1 Polarization: 1.40 SS G_CDS: -6.03 Total: -4.63 kcal
Atomic # 6 Polarization: -13.96 SS G_CDS: -0.33 Total: -14.29 kcal
Atomic # 7 Polarization: -39.36 SS G_CDS: -0.50 Total: -39.86 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -29.97 -7.84 -37.81 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000108286261.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.629 kcal
(2) G-P(sol) polarization free energy of solvation -29.975 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.346 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds