Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47402 * 2 1 4 4 C 1.52998 * 109.47402 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.35291 * 52.85897 * 4 3 2 6 6 C 1.54593 * 110.30979 * 290.71508 * 4 3 2 7 7 C 1.54933 * 102.92591 * 219.12709 * 6 4 3 8 8 N 1.48538 * 103.22579 * 37.41127 * 7 6 4 9 9 C 1.46897 * 111.00123 * 200.28130 * 8 7 6 10 10 C 1.50697 * 109.47107 * 307.39950 * 9 8 7 11 11 H 1.07997 * 120.00355 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99829 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00334 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99954 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47352 * 90.00053 * 14 12 10 16 16 H 1.48501 * 109.47124 * 210.00484 * 14 12 10 17 17 H 1.48503 * 109.47084 * 330.00041 * 14 12 10 18 18 C 1.47899 * 105.82096 * 320.79703 * 8 7 6 19 19 H 1.09010 * 109.47012 * 300.00052 * 1 2 3 20 20 H 1.09001 * 109.47206 * 59.99915 * 1 2 3 21 21 H 1.08997 * 109.47218 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47067 * 239.99702 * 2 1 3 23 23 H 1.09001 * 109.47206 * 120.00085 * 2 1 3 24 24 H 1.09004 * 109.47133 * 59.99518 * 3 2 1 25 25 H 1.09001 * 109.47009 * 300.00206 * 3 2 1 26 26 H 1.09007 * 110.72450 * 337.48700 * 6 4 3 27 27 H 1.09004 * 110.72461 * 100.76623 * 6 4 3 28 28 H 1.09007 * 110.66620 * 278.98326 * 7 6 4 29 29 H 1.08993 * 110.81619 * 155.91514 * 7 6 4 30 30 H 1.09002 * 109.46809 * 67.39630 * 9 8 7 31 31 H 1.09000 * 109.47376 * 187.39850 * 9 8 7 32 32 H 0.96994 * 120.00170 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.91646 * 265.97786 * 18 8 7 34 34 H 1.08998 * 109.92144 * 144.68177 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9495 0.8253 -0.8137 6 6 4.1060 0.9298 1.3570 7 6 5.3248 1.8500 1.6182 8 7 4.8709 3.1686 1.1067 9 6 6.0148 4.0453 0.8226 10 6 6.9055 4.1179 2.0360 11 1 6.6479 3.5675 2.9287 12 6 8.0500 4.8862 2.0060 13 7 8.3641 5.5561 0.9187 14 14 9.1538 4.9768 3.5103 15 1 10.1735 3.8994 3.4417 16 1 9.8311 6.2978 3.5484 17 1 8.3342 4.8053 4.7367 18 6 4.1046 2.8812 -0.1252 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.3563 1.0515 2.1389 27 1 4.4186 -0.1116 1.2796 28 1 6.1960 1.5014 1.0633 29 1 5.5463 1.9063 2.6839 30 1 6.5795 3.6444 -0.0192 31 1 5.6547 5.0441 0.5759 32 1 9.1690 6.0969 0.8977 33 1 4.7567 2.9602 -0.9951 34 1 3.2728 3.5796 -0.2167 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133083951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = -22.539731 kcal Electronic energy + Delta-G solvation = -12669.800643 eV Core-core repulsion = 10601.473851 eV Total energy + Delta-G solvation = -2068.326792 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.49416 -34.99747 -32.82128 -30.84936 -28.75171 -26.92071 -24.73632 -22.46183 -21.42270 -19.95692 -19.47709 -16.33522 -15.37039 -14.92306 -14.76058 -14.12834 -13.41274 -13.20933 -12.95981 -12.56969 -12.32846 -11.85901 -11.47616 -11.26150 -11.17656 -10.94055 -10.72378 -10.65256 -10.38408 -10.29282 -10.11823 -10.03296 -9.69859 -9.03567 -8.44489 -7.23573 -6.01780 -4.03237 3.32417 3.38434 3.42972 4.44350 4.86114 4.98779 5.10620 5.14646 5.30851 5.33571 5.44731 5.59209 5.77945 5.84801 5.91382 5.97351 6.01290 6.09532 6.17902 6.31112 6.36440 6.43973 6.52962 6.65688 6.75673 6.83136 7.28355 7.42975 7.78733 8.04033 8.25674 8.56309 9.04775 9.61254 11.09726 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.084223 B = 0.006766 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.369966 B = 4137.584314 C = 4332.613577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.098 4.098 5 H 0.065 0.935 6 C -0.121 4.121 7 C 0.053 3.947 8 N -0.518 5.518 9 C 0.183 3.817 10 C -0.512 4.512 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.897 3.103 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.038 3.962 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.075 0.925 30 H -0.008 1.008 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.034 0.966 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.803 -9.650 -1.722 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.117 4.117 5 H 0.084 0.916 6 C -0.159 4.159 7 C -0.075 4.075 8 N -0.243 5.243 9 C 0.057 3.943 10 C -0.551 4.551 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.091 4.091 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.009 0.991 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.979 -9.227 -1.414 14.411 hybrid contribution 1.297 -0.179 0.042 1.310 sum -9.682 -9.406 -1.372 13.568 Atomic orbital electron populations 1.21780 0.96333 1.01112 1.01699 1.21548 0.95322 0.97509 1.01821 1.21661 0.94737 0.96095 1.01955 1.22033 0.95086 0.96805 0.97826 0.91634 1.22632 0.98490 0.98203 0.96590 1.22955 0.94665 0.89012 1.00911 1.64830 1.24157 1.11224 1.24075 1.19896 0.86214 0.92148 0.96008 1.21228 1.06137 1.28488 0.99230 0.91871 1.25000 0.97827 0.95484 0.96250 1.69965 1.25755 1.30622 1.27429 0.86506 0.80551 0.77296 0.83138 1.20734 1.21206 1.19753 1.22904 0.97970 0.94812 0.93385 0.92793 0.92960 0.93186 0.92444 0.91974 0.91594 0.92386 0.91366 0.92298 0.94453 0.90630 0.99068 0.95088 0.92931 0.94769 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.35 5.80 -26.73 -0.16 -1.50 16 3 C -0.11 -1.37 4.37 -26.73 -0.12 -1.48 16 4 C -0.10 -1.51 3.00 -89.26 -0.27 -1.77 16 5 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 6 C -0.12 -1.92 5.87 -24.87 -0.15 -2.06 16 7 C 0.05 1.07 5.55 -1.90 -0.01 1.06 16 8 N -0.52 -11.81 5.39 -231.89 -1.25 -13.06 16 9 C 0.18 4.98 4.79 -4.98 -0.02 4.96 16 10 C -0.51 -14.76 8.56 -34.44 -0.29 -15.05 16 11 H 0.06 1.79 6.52 -52.49 -0.34 1.44 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 14 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.04 0.72 6.36 -2.75 -0.02 0.70 16 19 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.68 7.58 -51.93 -0.39 0.28 16 24 H 0.07 0.89 7.99 -51.93 -0.42 0.48 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.05 7.76 -51.92 -0.40 0.64 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.80 8.02 -51.93 -0.42 0.39 16 29 H 0.08 1.58 7.14 -51.93 -0.37 1.21 16 30 H -0.01 -0.24 7.81 -51.93 -0.41 -0.65 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 34 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 LS Contribution 270.72 15.07 4.08 4.08 Total: -1.00 -30.01 270.72 -8.27 -38.28 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -6.05 Total: -5.01 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -0.76 Total: -14.70 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.51 Total: -39.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.01 -8.27 -38.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133083951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.745 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds