Wall clock time and date at job start Mon Mar 30 2020 02:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47402 * 2 1 4 4 C 1.52998 * 109.47402 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.35291 * 52.85897 * 4 3 2 6 6 C 1.54593 * 110.30979 * 290.71508 * 4 3 2 7 7 C 1.54933 * 102.92591 * 219.12709 * 6 4 3 8 8 N 1.48538 * 103.22579 * 37.41127 * 7 6 4 9 9 C 1.46897 * 111.00123 * 200.28130 * 8 7 6 10 10 C 1.50697 * 109.47107 * 307.39950 * 9 8 7 11 11 H 1.07997 * 120.00355 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99829 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00334 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99954 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47352 * 90.00053 * 14 12 10 16 16 H 1.48501 * 109.47124 * 210.00484 * 14 12 10 17 17 H 1.48503 * 109.47084 * 330.00041 * 14 12 10 18 18 C 1.47899 * 105.82096 * 320.79703 * 8 7 6 19 19 H 1.09010 * 109.47012 * 300.00052 * 1 2 3 20 20 H 1.09001 * 109.47206 * 59.99915 * 1 2 3 21 21 H 1.08997 * 109.47218 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47067 * 239.99702 * 2 1 3 23 23 H 1.09001 * 109.47206 * 120.00085 * 2 1 3 24 24 H 1.09004 * 109.47133 * 59.99518 * 3 2 1 25 25 H 1.09001 * 109.47009 * 300.00206 * 3 2 1 26 26 H 1.09007 * 110.72450 * 337.48700 * 6 4 3 27 27 H 1.09004 * 110.72461 * 100.76623 * 6 4 3 28 28 H 1.09007 * 110.66620 * 278.98326 * 7 6 4 29 29 H 1.08993 * 110.81619 * 155.91514 * 7 6 4 30 30 H 1.09002 * 109.46809 * 67.39630 * 9 8 7 31 31 H 1.09000 * 109.47376 * 187.39850 * 9 8 7 32 32 H 0.96994 * 120.00170 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.91646 * 265.97786 * 18 8 7 34 34 H 1.08998 * 109.92144 * 144.68177 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9495 0.8253 -0.8137 6 6 4.1060 0.9298 1.3570 7 6 5.3248 1.8500 1.6182 8 7 4.8709 3.1686 1.1067 9 6 6.0148 4.0453 0.8226 10 6 6.9055 4.1179 2.0360 11 1 6.6479 3.5675 2.9287 12 6 8.0500 4.8862 2.0060 13 7 8.3641 5.5561 0.9187 14 14 9.1538 4.9768 3.5103 15 1 10.1735 3.8994 3.4417 16 1 9.8311 6.2978 3.5484 17 1 8.3342 4.8053 4.7367 18 6 4.1046 2.8812 -0.1252 19 1 -0.3633 0.5139 0.8901 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.3563 1.0515 2.1389 27 1 4.4186 -0.1116 1.2796 28 1 6.1960 1.5014 1.0633 29 1 5.5463 1.9063 2.6839 30 1 6.5795 3.6444 -0.0192 31 1 5.6547 5.0441 0.5759 32 1 9.1690 6.0969 0.8977 33 1 4.7567 2.9602 -0.9951 34 1 3.2728 3.5796 -0.2167 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133083951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:26 Heat of formation + Delta-G solvation = -41.621698 kcal Electronic energy + Delta-G solvation = -12670.628099 eV Core-core repulsion = 10601.473851 eV Total energy + Delta-G solvation = -2069.154248 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01585 -36.32087 -34.77351 -32.39609 -30.19080 -28.76578 -26.15654 -24.36533 -22.46643 -21.60182 -20.82309 -18.47790 -17.06164 -16.35395 -16.15587 -15.74021 -15.02510 -14.62472 -14.29453 -14.04331 -13.82047 -13.32827 -13.04208 -12.74655 -12.71866 -12.55988 -12.26506 -12.19661 -11.85584 -11.69419 -11.45059 -11.37207 -11.21577 -11.04058 -10.66836 -9.11961 -8.24958 -6.35973 1.38859 1.41022 1.52776 2.38126 3.08261 3.43915 3.72632 3.86871 3.93525 4.31113 4.38766 4.47768 4.52654 4.68202 4.73912 4.82971 4.90547 4.97487 5.05142 5.08399 5.10204 5.18070 5.22590 5.26429 5.35817 5.44527 5.52247 5.56832 5.61869 5.94799 6.25629 6.54451 6.80922 7.34602 8.87515 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.084223 B = 0.006766 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.369966 B = 4137.584314 C = 4332.613577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.089 4.089 5 H 0.077 0.923 6 C -0.106 4.106 7 C 0.048 3.952 8 N -0.530 5.530 9 C 0.198 3.802 10 C -0.532 4.532 11 H 0.065 0.935 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.263 1.263 18 C 0.033 3.967 19 H 0.052 0.948 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.019 0.981 29 H 0.066 0.934 30 H -0.039 1.039 31 H 0.000 1.000 32 H 0.266 0.734 33 H 0.019 0.981 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 -11.170 -0.811 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.138 4.138 4 C -0.108 4.108 5 H 0.096 0.904 6 C -0.144 4.144 7 C -0.080 4.080 8 N -0.254 5.254 9 C 0.071 3.929 10 C -0.570 4.570 11 H 0.084 0.916 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.797 3.203 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.188 1.188 18 C -0.095 4.095 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.038 0.962 29 H 0.084 0.916 30 H -0.021 1.021 31 H 0.018 0.982 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.796 -10.764 -0.506 15.977 hybrid contribution 1.517 0.312 -0.293 1.577 sum -10.278 -10.452 -0.799 14.681 Atomic orbital electron populations 1.21766 0.95263 1.01978 1.01818 1.21515 0.96246 0.95795 1.02280 1.21606 0.92469 0.97794 1.01975 1.22010 0.96950 0.93900 0.97985 0.90418 1.22582 0.96331 0.98511 0.97013 1.23001 0.96333 0.88827 0.99828 1.64723 1.22357 1.12323 1.26041 1.19542 0.87197 0.91450 0.94673 1.21533 1.06919 1.28889 0.99656 0.91639 1.25991 0.99370 0.94725 0.99649 1.70099 1.26480 1.31217 1.29762 0.85323 0.78354 0.77664 0.78936 1.19598 1.20540 1.18760 1.23029 0.97370 0.97950 0.91199 0.92908 0.92683 0.91979 0.91777 0.91734 0.92263 0.91791 0.90323 0.89506 0.96216 0.91589 1.02093 0.98224 0.92573 0.96298 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.23 5.80 30.59 0.18 -2.05 16 3 C -0.10 -2.33 4.37 30.59 0.13 -2.19 16 4 C -0.09 -2.57 3.00 -9.92 -0.03 -2.60 16 5 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 6 C -0.11 -3.14 5.87 31.80 0.19 -2.95 16 7 C 0.05 1.96 5.55 86.65 0.48 2.44 16 8 N -0.53 -24.66 5.39 -887.57 -4.78 -29.44 16 9 C 0.20 11.28 4.79 85.56 0.41 11.69 16 10 C -0.53 -31.33 8.56 25.60 0.22 -31.12 16 11 H 0.07 3.74 6.52 -2.91 -0.02 3.72 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 14 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 18 C 0.03 1.25 6.36 86.45 0.55 1.80 16 19 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 20 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.17 7.58 -2.39 -0.02 1.15 16 24 H 0.06 1.46 7.99 -2.38 -0.02 1.44 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 2.19 7.76 -2.38 -0.02 2.17 16 27 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.02 0.86 8.02 -2.38 -0.02 0.84 16 29 H 0.07 2.77 7.14 -2.39 -0.02 2.75 16 30 H -0.04 -2.37 7.81 -2.39 -0.02 -2.38 16 31 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 33 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 34 H 0.07 2.65 7.68 -2.39 -0.02 2.63 16 Total: -1.00 -65.52 270.72 1.86 -63.65 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.03 Total: 2.52 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 3.30 Total: -26.16 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -4.50 Total: -87.10 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.52 1.86 -63.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133083951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.033 kcal (2) G-P(sol) polarization free energy of solvation -65.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds