Wall clock time and date at job start Mon Mar 30 2020 01:50:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31504 * 1
3 3 Si 1.86809 * 120.00052 * 2 1
4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1
5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1
6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1
7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3
8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2
11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7
12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9
13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 10
14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11
15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12
16 16 C 1.53002 * 117.50015 * 243.74696 * 15 14 13
17 17 C 1.53008 * 117.50075 * 175.09104 * 15 14 13
18 18 H 0.96998 * 120.00316 * 359.97438 * 1 2 3
19 19 H 1.09005 * 109.46937 * 59.99856 * 9 7 2
20 20 H 1.09004 * 109.47318 * 300.00373 * 9 7 2
21 21 H 1.08995 * 109.47319 * 60.00217 * 10 9 7
22 22 H 1.09003 * 109.47435 * 299.99542 * 10 9 7
23 23 H 1.00902 * 111.00190 * 56.03777 * 11 10 9
24 24 H 1.09002 * 109.47043 * 299.99792 * 12 11 10
25 25 H 1.09001 * 109.47354 * 59.99854 * 12 11 10
26 26 H 1.09002 * 109.47153 * 300.00004 * 13 12 11
27 27 H 1.08998 * 109.47533 * 59.99633 * 13 12 11
28 28 H 1.09002 * 109.47103 * 300.00247 * 14 13 12
29 29 H 1.09001 * 109.47066 * 60.00169 * 14 13 12
30 30 H 1.08997 * 115.55067 * 29.41999 * 15 14 13
31 31 H 1.09000 * 117.49856 * 359.97438 * 16 15 14
32 32 H 1.08999 * 117.49661 * 145.01806 * 16 15 14
33 33 H 1.08999 * 117.49506 * 214.98514 * 17 15 14
34 34 H 1.09002 * 117.49810 * 359.97438 * 17 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3150 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6620 -0.0005
11 7 1.5109 -4.9342 -0.0012
12 6 2.4354 -6.0758 -0.0006
13 6 1.6354 -7.3800 -0.0006
14 6 2.5982 -8.5690 -0.0006
15 6 1.7982 -9.8731 0.0000
16 6 1.9410 -10.7889 1.2174
17 6 2.5814 -11.1825 -0.1161
18 1 -0.4850 0.8400 0.0004
19 1 0.6241 -2.5567 -0.8903
20 1 0.6247 -2.5571 0.8897
21 1 2.8720 -3.6043 0.8894
22 1 2.8720 -3.6043 -0.8906
23 1 0.8746 -4.9841 -0.7827
24 1 3.0640 -6.0348 -0.8901
25 1 3.0628 -6.0349 0.8899
26 1 1.0071 -7.4208 0.8892
27 1 1.0077 -7.4213 -0.8907
28 1 3.2262 -8.5279 -0.8906
29 1 3.2262 -8.5280 0.8894
30 1 0.8221 -9.8261 -0.4827
31 1 2.6051 -10.4625 2.0176
32 1 1.0588 -11.3446 1.5353
33 1 2.1203 -11.9968 -0.6749
34 1 3.6666 -11.1147 -0.1933
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000156975236.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:50:26
Heat of formation + Delta-G solvation = -6.351724 kcal
Electronic energy + Delta-G solvation = -11797.027145 eV
Core-core repulsion = 9729.402318 eV
Total energy + Delta-G solvation = -2067.624827 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-37.97566 -36.16480 -33.42539 -32.01726 -29.08418 -25.73706 -23.46603 -22.55698
-21.27858 -20.59009 -20.24829 -16.29572 -15.93786 -15.47183 -14.80642 -14.40845
-14.02700 -13.76524 -13.15139 -12.50960 -12.19964 -11.77960 -11.70942 -11.65270
-11.13297 -11.02925 -10.89016 -10.70871 -10.53867 -10.28264 -9.98507 -9.92853
-9.32294 -9.11485 -8.33209 -7.76446 -5.97598 -4.00161 3.33498 3.39470
3.43129 3.63260 4.38869 4.49091 4.73969 4.77336 4.97473 5.11547
5.22181 5.38194 5.44062 5.46572 5.64644 5.72713 5.82679 5.86191
5.91946 5.93122 6.14483 6.32408 6.36639 6.42117 6.50463 7.01447
7.53119 7.76273 7.86527 8.00891 8.11824 8.46403 9.07179 9.63450
11.13916
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.124784 B = 0.004279 C = 0.004205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 224.333505 B = 6542.013044 C = 6656.758033
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.057 3.943
3 Si 0.893 3.107
4 H -0.281 1.281
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.522 4.522
8 H 0.054 0.946
9 C 0.024 3.976
10 C 0.065 3.935
11 N -0.694 5.694
12 C 0.058 3.942
13 C -0.114 4.114
14 C -0.088 4.088
15 C -0.149 4.149
16 C -0.182 4.182
17 C -0.186 4.186
18 H 0.260 0.740
19 H 0.013 0.987
20 H 0.025 0.975
21 H 0.057 0.943
22 H 0.014 0.986
23 H 0.335 0.665
24 H 0.020 0.980
25 H 0.065 0.935
26 H 0.071 0.929
27 H 0.059 0.941
28 H 0.063 0.937
29 H 0.063 0.937
30 H 0.104 0.896
31 H 0.093 0.907
32 H 0.091 0.909
33 H 0.091 0.909
34 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.187 -18.022 -0.421 18.506
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.144 4.144
3 Si 0.721 3.279
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.561 4.561
8 H 0.072 0.928
9 C -0.013 4.013
10 C -0.063 4.063
11 N -0.324 5.324
12 C -0.072 4.072
13 C -0.152 4.152
14 C -0.126 4.126
15 C -0.167 4.167
16 C -0.219 4.219
17 C -0.223 4.223
18 H 0.070 0.930
19 H 0.032 0.968
20 H 0.044 0.956
21 H 0.076 0.924
22 H 0.032 0.968
23 H 0.152 0.848
24 H 0.039 0.961
25 H 0.084 0.916
26 H 0.090 0.910
27 H 0.078 0.922
28 H 0.082 0.918
29 H 0.082 0.918
30 H 0.122 0.878
31 H 0.112 0.888
32 H 0.109 0.891
33 H 0.109 0.891
34 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 3.960 -17.899 0.274 18.334
hybrid contribution 0.766 0.943 -0.936 1.534
sum 4.726 -16.956 -0.662 17.615
Atomic orbital electron populations
1.69970 1.06041 1.26577 1.50699 1.25009 0.94851 0.99226 0.95323
0.86580 0.79843 0.83438 0.78048 1.20708 1.21183 1.19874 1.21193
0.92993 0.91057 1.50816 0.92766 1.19077 0.94050 0.90468 0.97712
1.22154 0.96964 0.88609 0.98552 1.60575 1.19965 1.02238 1.49670
1.21937 0.94765 0.90657 0.99860 1.21547 0.98114 0.92917 1.02589
1.21155 0.97446 0.92112 1.01880 1.22375 1.00777 0.91228 1.02314
1.23040 1.03062 1.04030 0.91752 1.22974 0.99683 0.98762 1.00895
0.92993 0.96817 0.95641 0.92428 0.96772 0.84782 0.96138 0.91638
0.91048 0.92243 0.91820 0.91845 0.87832 0.88812 0.89054 0.89087
0.88946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16
2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16
3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16
4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16
8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16
9 C 0.02 0.65 5.23 -27.89 -0.15 0.51 16
10 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16
11 N -0.69 -12.97 6.50 -113.78 -0.74 -13.70 16
12 C 0.06 0.87 5.69 -3.83 -0.02 0.84 16
13 C -0.11 -1.41 5.43 -26.74 -0.15 -1.55 16
14 C -0.09 -0.92 5.50 -26.74 -0.15 -1.07 16
15 C -0.15 -1.42 5.73 -90.62 -0.52 -1.94 16
16 C -0.18 -1.60 10.18 -26.69 -0.27 -1.87 16
17 C -0.19 -1.57 10.25 -26.69 -0.27 -1.85 16
18 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
19 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16
20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16
22 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16
23 H 0.34 6.01 8.73 -39.29 -0.34 5.66 16
24 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16
25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
29 H 0.06 0.65 7.87 -51.93 -0.41 0.25 16
30 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16
31 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16
32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
LS Contribution 285.32 15.07 4.30 4.30
Total: -1.00 -30.22 285.32 -8.88 -39.11
By element:
Atomic # 1 Polarization: 5.60 SS G_CDS: -6.20 Total: -0.61 kcal
Atomic # 6 Polarization: -17.44 SS G_CDS: -1.96 Total: -19.40 kcal
Atomic # 7 Polarization: -40.32 SS G_CDS: 0.00 Total: -40.33 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -30.22 -8.88 -39.11 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000156975236.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.757 kcal
(2) G-P(sol) polarization free energy of solvation -30.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.352 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds