Wall clock time and date at job start Mon Mar 30 2020 01:50:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31504 * 1
3 3 Si 1.86809 * 120.00052 * 2 1
4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1
5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1
6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1
7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3
8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2
11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7
12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9
13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 10
14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11
15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12
16 16 C 1.53002 * 117.50015 * 243.74696 * 15 14 13
17 17 C 1.53008 * 117.50075 * 175.09104 * 15 14 13
18 18 H 0.96998 * 120.00316 * 359.97438 * 1 2 3
19 19 H 1.09005 * 109.46937 * 59.99856 * 9 7 2
20 20 H 1.09004 * 109.47318 * 300.00373 * 9 7 2
21 21 H 1.08995 * 109.47319 * 60.00217 * 10 9 7
22 22 H 1.09003 * 109.47435 * 299.99542 * 10 9 7
23 23 H 1.00902 * 111.00190 * 56.03777 * 11 10 9
24 24 H 1.09002 * 109.47043 * 299.99792 * 12 11 10
25 25 H 1.09001 * 109.47354 * 59.99854 * 12 11 10
26 26 H 1.09002 * 109.47153 * 300.00004 * 13 12 11
27 27 H 1.08998 * 109.47533 * 59.99633 * 13 12 11
28 28 H 1.09002 * 109.47103 * 300.00247 * 14 13 12
29 29 H 1.09001 * 109.47066 * 60.00169 * 14 13 12
30 30 H 1.08997 * 115.55067 * 29.41999 * 15 14 13
31 31 H 1.09000 * 117.49856 * 359.97438 * 16 15 14
32 32 H 1.08999 * 117.49661 * 145.01806 * 16 15 14
33 33 H 1.08999 * 117.49506 * 214.98514 * 17 15 14
34 34 H 1.09002 * 117.49810 * 359.97438 * 17 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3150 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4465 2.6526 0.7001
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6620 -0.0005
11 7 1.5109 -4.9342 -0.0012
12 6 2.4354 -6.0758 -0.0006
13 6 1.6354 -7.3800 -0.0006
14 6 2.5982 -8.5690 -0.0006
15 6 1.7982 -9.8731 0.0000
16 6 1.9410 -10.7889 1.2174
17 6 2.5814 -11.1825 -0.1161
18 1 -0.4850 0.8400 0.0004
19 1 0.6241 -2.5567 -0.8903
20 1 0.6247 -2.5571 0.8897
21 1 2.8720 -3.6043 0.8894
22 1 2.8720 -3.6043 -0.8906
23 1 0.8746 -4.9841 -0.7827
24 1 3.0640 -6.0348 -0.8901
25 1 3.0628 -6.0349 0.8899
26 1 1.0071 -7.4208 0.8892
27 1 1.0077 -7.4213 -0.8907
28 1 3.2262 -8.5279 -0.8906
29 1 3.2262 -8.5280 0.8894
30 1 0.8221 -9.8261 -0.4827
31 1 2.6051 -10.4625 2.0176
32 1 1.0588 -11.3446 1.5353
33 1 2.1203 -11.9968 -0.6749
34 1 3.6666 -11.1147 -0.1933
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000156975236.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:50:25
Heat of formation + Delta-G solvation = -24.555480 kcal
Electronic energy + Delta-G solvation = -11797.816519 eV
Core-core repulsion = 9729.402318 eV
Total energy + Delta-G solvation = -2068.414201 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 197.148 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-38.80411 -37.58272 -35.30936 -33.55918 -30.84710 -27.25514 -25.19823 -23.21762
-22.64911 -22.07718 -21.23017 -18.51339 -17.10402 -16.56660 -16.42422 -15.73360
-15.26049 -15.18648 -14.61781 -14.19561 -13.76241 -13.21773 -12.88788 -12.74875
-12.66700 -12.41768 -12.34550 -12.13714 -11.86744 -11.66391 -11.42783 -11.31418
-10.94408 -10.69964 -10.57277 -9.29259 -8.20987 -6.33008 1.40281 1.42288
1.53558 2.40384 2.93715 3.12209 3.32045 3.82002 4.04306 4.10272
4.19555 4.25031 4.42007 4.56750 4.58416 4.75431 4.77293 4.81394
4.89851 4.96801 5.04997 5.09198 5.25379 5.28697 5.38651 5.43182
5.48744 5.65958 5.77901 6.13567 6.27872 6.54759 6.84181 7.36396
8.91331
Molecular weight = 197.15amu
Principal moments of inertia in cm(-1)
A = 0.124784 B = 0.004279 C = 0.004205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 224.333505 B = 6542.013044 C = 6656.758033
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.001 4.001
3 Si 0.970 3.030
4 H -0.271 1.271
5 H -0.281 1.281
6 H -0.263 1.263
7 C -0.547 4.547
8 H 0.061 0.939
9 C 0.030 3.970
10 C 0.083 3.917
11 N -0.702 5.702
12 C 0.058 3.942
13 C -0.104 4.104
14 C -0.081 4.081
15 C -0.162 4.162
16 C -0.185 4.185
17 C -0.179 4.179
18 H 0.265 0.735
19 H -0.008 1.008
20 H -0.006 1.006
21 H 0.057 0.943
22 H 0.019 0.981
23 H 0.339 0.661
24 H 0.028 0.972
25 H 0.065 0.935
26 H 0.062 0.938
27 H 0.063 0.937
28 H 0.068 0.932
29 H 0.064 0.936
30 H 0.103 0.897
31 H 0.094 0.906
32 H 0.098 0.902
33 H 0.101 0.899
34 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.436 -18.482 -0.614 19.275
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.199 4.199
3 Si 0.794 3.206
4 H -0.196 1.196
5 H -0.206 1.206
6 H -0.187 1.187
7 C -0.586 4.586
8 H 0.079 0.921
9 C -0.007 4.007
10 C -0.046 4.046
11 N -0.333 5.333
12 C -0.071 4.071
13 C -0.142 4.142
14 C -0.119 4.119
15 C -0.180 4.180
16 C -0.222 4.222
17 C -0.216 4.216
18 H 0.073 0.927
19 H 0.010 0.990
20 H 0.012 0.988
21 H 0.075 0.925
22 H 0.037 0.963
23 H 0.156 0.844
24 H 0.047 0.953
25 H 0.084 0.916
26 H 0.081 0.919
27 H 0.081 0.919
28 H 0.086 0.914
29 H 0.083 0.917
30 H 0.121 0.879
31 H 0.112 0.888
32 H 0.116 0.884
33 H 0.119 0.881
34 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 5.218 -18.386 0.078 19.112
hybrid contribution 0.338 1.033 -0.872 1.393
sum 5.556 -17.353 -0.794 18.238
Atomic orbital electron populations
1.70106 1.07876 1.27884 1.51333 1.26012 0.95809 1.03495 0.94538
0.85384 0.78606 0.78100 0.78558 1.19626 1.20633 1.18690 1.21626
0.93567 0.92270 1.51090 0.92117 1.18939 0.94341 0.92371 0.95071
1.21786 0.95619 0.88553 0.98675 1.60499 1.20647 1.02036 1.50115
1.22025 0.94572 0.90278 1.00191 1.21453 0.98130 0.92296 1.02352
1.21073 0.97036 0.91632 1.02181 1.22348 1.00976 0.91293 1.03360
1.23120 1.03462 1.03775 0.91813 1.23053 0.99936 0.98123 1.00490
0.92674 0.98981 0.98769 0.92492 0.96319 0.84382 0.95329 0.91633
0.91908 0.91876 0.91356 0.91709 0.87907 0.88759 0.88397 0.88092
0.88478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16
2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16
3 Si 0.97 44.76 29.54 68.60 2.03 46.79 16
4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16
5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16
7 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16
8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16
9 C 0.03 1.67 5.23 29.85 0.16 1.82 16
10 C 0.08 3.62 5.62 86.30 0.49 4.11 16
11 N -0.70 -26.01 6.50 -513.89 -3.34 -29.35 16
12 C 0.06 1.68 5.69 86.30 0.49 2.17 16
13 C -0.10 -2.45 5.43 30.59 0.17 -2.28 16
14 C -0.08 -1.56 5.50 30.59 0.17 -1.39 16
15 C -0.16 -2.82 5.73 -10.79 -0.06 -2.88 16
16 C -0.18 -2.93 10.18 30.62 0.31 -2.62 16
17 C -0.18 -2.65 10.25 30.62 0.31 -2.34 16
18 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16
19 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16
20 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16
21 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16
22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16
23 H 0.34 12.10 8.73 -89.69 -0.78 11.32 16
24 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16
25 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16
26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
29 H 0.06 1.22 7.87 -2.39 -0.02 1.21 16
30 H 0.10 1.80 8.08 -2.39 -0.02 1.79 16
31 H 0.09 1.47 8.03 -2.39 -0.02 1.45 16
32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16
33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
Total: -1.00 -63.98 285.32 1.95 -62.03
By element:
Atomic # 1 Polarization: 12.52 SS G_CDS: 0.25 Total: 12.77 kcal
Atomic # 6 Polarization: -37.46 SS G_CDS: 2.73 Total: -34.73 kcal
Atomic # 7 Polarization: -83.80 SS G_CDS: -3.06 Total: -86.86 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal
Total: -63.98 1.95 -62.03 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000156975236.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.473 kcal
(2) G-P(sol) polarization free energy of solvation -63.979 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.555 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds