Wall clock time and date at job start Mon Mar 30 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1 5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1 6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.53002 * 117.50015 * 243.74696 * 15 14 13 17 17 C 1.53008 * 117.50075 * 175.09104 * 15 14 13 18 18 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 20 20 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 21 21 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 22 22 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 23 23 H 1.00902 * 111.00190 * 56.03777 * 11 10 9 24 24 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 25 25 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 26 26 H 1.09002 * 109.47153 * 300.00004 * 13 12 11 27 27 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 28 28 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 29 29 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 30 30 H 1.08997 * 115.55067 * 29.41999 * 15 14 13 31 31 H 1.09000 * 117.49856 * 359.97438 * 16 15 14 32 32 H 1.08999 * 117.49661 * 145.01806 * 16 15 14 33 33 H 1.08999 * 117.49506 * 214.98514 * 17 15 14 34 34 H 1.09002 * 117.49810 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0006 14 6 2.5982 -8.5690 -0.0006 15 6 1.7982 -9.8731 0.0000 16 6 1.9410 -10.7889 1.2174 17 6 2.5814 -11.1825 -0.1161 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.8720 -3.6043 0.8894 22 1 2.8720 -3.6043 -0.8906 23 1 0.8746 -4.9841 -0.7827 24 1 3.0640 -6.0348 -0.8901 25 1 3.0628 -6.0349 0.8899 26 1 1.0071 -7.4208 0.8892 27 1 1.0077 -7.4213 -0.8907 28 1 3.2262 -8.5279 -0.8906 29 1 3.2262 -8.5280 0.8894 30 1 0.8221 -9.8261 -0.4827 31 1 2.6051 -10.4625 2.0176 32 1 1.0588 -11.3446 1.5353 33 1 2.1203 -11.9968 -0.6749 34 1 3.6666 -11.1147 -0.1933 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156975236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:25 Heat of formation + Delta-G solvation = -24.555480 kcal Electronic energy + Delta-G solvation = -11797.816519 eV Core-core repulsion = 9729.402318 eV Total energy + Delta-G solvation = -2068.414201 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.80411 -37.58272 -35.30936 -33.55918 -30.84710 -27.25514 -25.19823 -23.21762 -22.64911 -22.07718 -21.23017 -18.51339 -17.10402 -16.56660 -16.42422 -15.73360 -15.26049 -15.18648 -14.61781 -14.19561 -13.76241 -13.21773 -12.88788 -12.74875 -12.66700 -12.41768 -12.34550 -12.13714 -11.86744 -11.66391 -11.42783 -11.31418 -10.94408 -10.69964 -10.57277 -9.29259 -8.20987 -6.33008 1.40281 1.42288 1.53558 2.40384 2.93715 3.12209 3.32045 3.82002 4.04306 4.10272 4.19555 4.25031 4.42007 4.56750 4.58416 4.75431 4.77293 4.81394 4.89851 4.96801 5.04997 5.09198 5.25379 5.28697 5.38651 5.43182 5.48744 5.65958 5.77901 6.13567 6.27872 6.54759 6.84181 7.36396 8.91331 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.124784 B = 0.004279 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 224.333505 B = 6542.013044 C = 6656.758033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.030 3.970 10 C 0.083 3.917 11 N -0.702 5.702 12 C 0.058 3.942 13 C -0.104 4.104 14 C -0.081 4.081 15 C -0.162 4.162 16 C -0.185 4.185 17 C -0.179 4.179 18 H 0.265 0.735 19 H -0.008 1.008 20 H -0.006 1.006 21 H 0.057 0.943 22 H 0.019 0.981 23 H 0.339 0.661 24 H 0.028 0.972 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -18.482 -0.614 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.333 5.333 12 C -0.071 4.071 13 C -0.142 4.142 14 C -0.119 4.119 15 C -0.180 4.180 16 C -0.222 4.222 17 C -0.216 4.216 18 H 0.073 0.927 19 H 0.010 0.990 20 H 0.012 0.988 21 H 0.075 0.925 22 H 0.037 0.963 23 H 0.156 0.844 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.218 -18.386 0.078 19.112 hybrid contribution 0.338 1.033 -0.872 1.393 sum 5.556 -17.353 -0.794 18.238 Atomic orbital electron populations 1.70106 1.07876 1.27884 1.51333 1.26012 0.95809 1.03495 0.94538 0.85384 0.78606 0.78100 0.78558 1.19626 1.20633 1.18690 1.21626 0.93567 0.92270 1.51090 0.92117 1.18939 0.94341 0.92371 0.95071 1.21786 0.95619 0.88553 0.98675 1.60499 1.20647 1.02036 1.50115 1.22025 0.94572 0.90278 1.00191 1.21453 0.98130 0.92296 1.02352 1.21073 0.97036 0.91632 1.02181 1.22348 1.00976 0.91293 1.03360 1.23120 1.03462 1.03775 0.91813 1.23053 0.99936 0.98123 1.00490 0.92674 0.98981 0.98769 0.92492 0.96319 0.84382 0.95329 0.91633 0.91908 0.91876 0.91356 0.91709 0.87907 0.88759 0.88397 0.88092 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.67 5.23 29.85 0.16 1.82 16 10 C 0.08 3.62 5.62 86.30 0.49 4.11 16 11 N -0.70 -26.01 6.50 -513.89 -3.34 -29.35 16 12 C 0.06 1.68 5.69 86.30 0.49 2.17 16 13 C -0.10 -2.45 5.43 30.59 0.17 -2.28 16 14 C -0.08 -1.56 5.50 30.59 0.17 -1.39 16 15 C -0.16 -2.82 5.73 -10.79 -0.06 -2.88 16 16 C -0.18 -2.93 10.18 30.62 0.31 -2.62 16 17 C -0.18 -2.65 10.25 30.62 0.31 -2.34 16 18 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 19 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 20 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 21 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.34 12.10 8.73 -89.69 -0.78 11.32 16 24 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.22 7.87 -2.39 -0.02 1.21 16 30 H 0.10 1.80 8.08 -2.39 -0.02 1.79 16 31 H 0.09 1.47 8.03 -2.39 -0.02 1.45 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -63.98 285.32 1.95 -62.03 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.25 Total: 12.77 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 2.73 Total: -34.73 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -3.06 Total: -86.86 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.98 1.95 -62.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156975236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.473 kcal (2) G-P(sol) polarization free energy of solvation -63.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds