Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47073 * 2 1 4 4 C 1.53003 * 109.46913 * 119.99666 * 2 1 3 5 5 C 1.53786 * 113.61503 * 80.86227 * 4 2 1 6 6 C 1.54049 * 86.98426 * 140.01654 * 5 4 2 7 7 N 1.46897 * 113.69699 * 220.01034 * 6 5 4 8 8 C 1.46907 * 111.00124 * 252.53706 * 7 6 5 9 9 C 1.50695 * 109.46909 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00695 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00035 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99932 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00512 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46972 * 59.99979 * 13 11 9 15 15 H 1.48496 * 109.47278 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46708 * 300.00193 * 13 11 9 17 17 C 1.53781 * 113.61337 * 178.47021 * 4 2 1 18 18 H 1.08998 * 109.47290 * 59.99818 * 1 2 3 19 19 H 1.08997 * 109.47615 * 180.02562 * 1 2 3 20 20 H 1.09008 * 109.47278 * 300.00237 * 1 2 3 21 21 H 1.08998 * 109.47226 * 239.99681 * 2 1 3 22 22 H 1.08994 * 109.46682 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.46552 * 299.99939 * 3 2 1 24 24 H 1.08998 * 109.47355 * 59.99760 * 3 2 1 25 25 H 1.09002 * 112.85017 * 309.66610 * 4 2 1 26 26 H 1.08992 * 113.61675 * 254.61398 * 5 4 2 27 27 H 1.09000 * 113.60973 * 25.51686 * 5 4 2 28 28 H 1.09003 * 113.61268 * 89.11946 * 6 5 4 29 29 H 1.00899 * 111.00371 * 128.58116 * 7 6 5 30 30 H 1.08998 * 109.46816 * 299.99271 * 8 7 6 31 31 H 1.08997 * 109.46730 * 59.99761 * 8 7 6 32 32 H 0.97001 * 120.00366 * 179.97438 * 12 11 9 33 33 H 1.08999 * 113.61567 * 334.48261 * 17 4 2 34 34 H 1.08998 * 113.61196 * 105.38615 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0343 -2.2537 1.1214 6 6 3.3854 -2.2391 1.8613 7 7 4.3608 -3.1995 1.3282 8 6 4.5410 -4.3317 2.2468 9 6 5.5458 -5.2937 1.6672 10 1 6.0050 -5.0848 0.7122 11 6 5.8797 -6.4401 2.3565 12 7 5.3209 -6.6943 3.5197 13 14 7.1258 -7.6323 1.6385 14 1 8.4240 -6.9368 1.4489 15 1 7.3078 -8.7769 2.5670 16 1 6.6355 -8.1313 0.3286 17 6 3.5732 -0.8094 1.3269 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 3.1299 1.4425 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.5765 -0.3579 2.1666 26 1 1.2332 -2.7357 1.6817 27 1 2.1038 -2.6062 0.0923 28 1 3.2898 -2.2909 2.9459 29 1 5.2421 -2.7489 1.1325 30 1 4.9007 -3.9657 3.2084 31 1 3.5879 -4.8421 2.3856 32 1 5.5555 -7.5011 4.0045 33 1 4.0628 -0.7678 0.3539 34 1 4.0137 -0.1262 2.0531 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205548163.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = -25.308611 kcal Electronic energy + Delta-G solvation = -12459.645830 eV Core-core repulsion = 10391.198971 eV Total energy + Delta-G solvation = -2068.446859 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39743 -36.51544 -34.91947 -33.21994 -28.58321 -28.20640 -26.15567 -25.13234 -23.49267 -20.96561 -20.34816 -18.50242 -16.76903 -16.50736 -16.27756 -15.48929 -15.18527 -14.41320 -14.35217 -14.09314 -13.53400 -13.26818 -13.00088 -12.95785 -12.80072 -12.58264 -12.31366 -12.16044 -11.90462 -11.72684 -11.49437 -11.33528 -10.97472 -10.72950 -10.65862 -9.10677 -8.23545 -6.35781 1.40361 1.44625 1.52699 2.39576 3.09280 3.57038 3.68040 3.78614 3.98847 4.11871 4.28447 4.30164 4.57202 4.72986 4.79239 4.89768 4.92981 4.97944 5.03663 5.07282 5.10976 5.14938 5.21439 5.33182 5.41323 5.49090 5.52839 5.60821 5.72981 6.03341 6.48082 6.74250 6.89550 7.35703 8.88060 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.080788 B = 0.005988 C = 0.005908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.501337 B = 4674.554951 C = 4738.074515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.088 4.088 5 C -0.120 4.120 6 C 0.039 3.961 7 N -0.677 5.677 8 C 0.209 3.791 9 C -0.539 4.539 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.976 3.024 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.268 1.268 17 C -0.122 4.122 18 H 0.062 0.938 19 H 0.046 0.954 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.334 0.666 30 H -0.043 1.043 31 H -0.005 1.005 32 H 0.266 0.734 33 H 0.088 0.912 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 14.086 -6.027 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.199 4.199 4 C -0.107 4.107 5 C -0.158 4.158 6 C -0.072 4.072 7 N -0.307 5.307 8 C 0.081 3.919 9 C -0.577 4.577 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.800 3.200 14 H -0.189 1.189 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.160 4.160 18 H 0.081 0.919 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.152 0.848 30 H -0.025 1.025 31 H 0.013 0.987 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.842 13.632 -6.270 16.491 hybrid contribution 1.008 -0.650 0.916 1.509 sum -5.835 12.982 -5.353 15.207 Atomic orbital electron populations 1.21792 0.94661 1.01519 1.02126 1.21051 0.96164 0.96473 0.96479 1.21782 1.01035 0.95077 1.02046 1.22370 0.95057 0.94077 0.99180 1.23106 0.95659 0.96515 1.00530 1.23191 0.95154 0.92818 0.96003 1.60690 1.13722 1.09818 1.46432 1.19211 0.94671 0.88987 0.88994 1.21548 1.24078 1.06329 1.05761 0.91681 1.26009 0.98719 0.99949 0.95126 1.70098 1.44844 1.27369 1.15290 0.85336 0.78860 0.77625 0.78164 1.18938 1.20678 1.19288 1.23152 0.97231 0.94077 1.01529 0.91871 0.93436 0.92311 0.91891 0.92816 0.91998 0.92379 0.88996 0.93075 0.90432 0.93789 0.84823 1.02489 0.98708 0.92571 0.89309 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.17 71.98 0.66 -1.97 16 2 C -0.08 -1.71 2.65 -10.79 -0.03 -1.74 16 3 C -0.14 -2.45 9.01 71.98 0.65 -1.80 16 4 C -0.09 -2.19 3.11 -10.26 -0.03 -2.22 16 5 C -0.12 -3.87 7.44 31.21 0.23 -3.64 16 6 C 0.04 1.44 4.14 45.53 0.19 1.63 16 7 N -0.68 -30.61 6.55 -492.38 -3.23 -33.84 16 8 C 0.21 11.79 5.28 85.55 0.45 12.25 16 9 C -0.54 -31.80 9.32 25.60 0.24 -31.56 16 10 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 11 C 0.00 0.00 5.46 84.65 0.46 0.46 16 12 N -0.94 -58.04 13.29 21.45 0.28 -57.76 16 13 Si 0.98 45.04 29.54 68.60 2.03 47.07 16 14 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 17 C -0.12 -3.38 6.32 31.12 0.20 -3.19 16 18 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 19 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 20 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 21 H 0.06 1.41 7.98 -2.39 -0.02 1.39 16 22 H 0.05 0.95 7.50 -2.39 -0.02 0.93 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 2.63 7.99 -2.39 -0.02 2.61 16 28 H 0.04 1.78 7.87 -2.39 -0.02 1.76 16 29 H 0.33 14.24 8.54 -89.69 -0.77 13.48 16 30 H -0.04 -2.57 8.13 -2.39 -0.02 -2.59 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.09 2.41 8.10 -2.39 -0.02 2.39 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -64.55 278.09 2.38 -62.17 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.27 Total: 14.13 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 3.02 Total: -31.78 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -2.94 Total: -91.59 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.55 2.38 -62.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205548163.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.863 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds