Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00506 * 2 1 4 4 H 1.48496 * 109.46935 * 270.00079 * 3 2 1 5 5 H 1.48507 * 109.47218 * 29.99862 * 3 2 1 6 6 H 1.48492 * 109.47204 * 149.99839 * 3 2 1 7 7 C 1.38815 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99738 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.54248 * 108.89537 * 296.39524 * 11 10 9 13 13 C 1.50550 * 108.48395 * 159.17985 * 12 11 10 14 14 C 1.54068 * 112.41457 * 94.26857 * 13 12 11 15 15 C 1.54066 * 112.81611 * 318.27436 * 14 13 12 16 16 C 1.50477 * 112.49695 * 318.29173 * 15 14 13 17 17 C 1.45537 * 108.89398 * 173.60521 * 11 10 9 18 18 H 0.97000 * 119.99950 * 359.97438 * 1 2 3 19 19 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 20 20 H 1.09001 * 109.47060 * 300.00287 * 10 9 7 21 21 H 1.09004 * 109.47073 * 59.99776 * 10 9 7 22 22 H 1.09002 * 108.87282 * 54.99745 * 11 10 9 23 23 H 1.09008 * 109.62330 * 278.97719 * 12 11 10 24 24 H 1.09000 * 109.62936 * 39.55337 * 12 11 10 25 25 H 1.09004 * 108.92282 * 333.51199 * 13 12 11 26 26 H 1.09006 * 108.91689 * 215.01805 * 13 12 11 27 27 H 1.09002 * 108.81407 * 197.41999 * 14 13 12 28 28 H 1.09000 * 108.73078 * 79.07815 * 14 13 12 29 29 H 1.08994 * 108.88063 * 197.51092 * 15 14 13 30 30 H 1.08999 * 108.87575 * 79.06600 * 15 14 13 31 31 H 1.08997 * 109.62723 * 334.43927 * 16 15 14 32 32 H 1.09003 * 109.62368 * 213.85974 * 16 15 14 33 33 H 1.09000 * 108.89517 * 303.43801 * 17 11 10 34 34 H 1.09007 * 108.89778 * 62.03200 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4400 0.7000 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2024 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 -0.0001 12 6 0.2452 -4.7781 1.3068 13 6 -1.0278 -5.5541 1.0979 14 6 -0.9054 -7.0189 1.5597 15 6 0.4391 -7.6593 1.1652 16 6 0.8638 -7.2926 -0.2311 17 6 1.7973 -6.0672 -0.1535 18 1 -0.4850 0.8401 0.0004 19 1 0.3554 -2.3881 0.0005 20 1 2.6845 -3.7147 -0.8894 21 1 2.6845 -3.7147 0.8905 22 1 0.3850 -4.7030 -0.8452 23 1 0.8223 -5.2285 2.1145 24 1 0.0060 -3.7443 1.5562 25 1 -1.2814 -5.5386 0.0379 26 1 -1.8304 -5.0738 1.6576 27 1 -1.7145 -7.5970 1.1133 28 1 -1.0064 -7.0534 2.6445 29 1 0.3467 -8.7433 1.2325 30 1 1.2062 -7.3286 1.8654 31 1 -0.0143 -7.0468 -0.8282 32 1 1.3954 -8.1297 -0.6838 33 1 2.3911 -6.0175 -1.0661 34 1 2.4677 -6.1893 0.6973 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223577428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = -19.711944 kcal Electronic energy + Delta-G solvation = -12938.416461 eV Core-core repulsion = 10870.212292 eV Total energy + Delta-G solvation = -2068.204170 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.90320 -34.80075 -32.55756 -31.80112 -30.03342 -26.02953 -24.49892 -23.38812 -21.45686 -19.85582 -18.97637 -17.06406 -15.42684 -14.81451 -14.49505 -14.33012 -13.64476 -13.24432 -12.75013 -12.63133 -12.50454 -11.92205 -11.82102 -11.45093 -10.92989 -10.78965 -10.47990 -10.31411 -10.17149 -10.07983 -10.02888 -9.92344 -9.63399 -9.49505 -8.80002 -6.83238 -5.70429 -2.97876 3.47218 3.52046 3.53953 4.64386 4.84649 4.96542 5.05004 5.40216 5.42651 5.49359 5.57341 5.65042 5.70825 5.78412 5.91148 6.05124 6.19091 6.27604 6.29299 6.35167 6.42042 6.47797 6.53209 6.56733 6.61842 6.70522 6.90286 7.04847 7.09030 7.75844 8.49326 9.60058 10.20544 10.55559 11.52750 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.068226 B = 0.007619 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.301625 B = 3674.354898 C = 3938.479378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.155 3.845 11 C -0.094 4.094 12 C -0.110 4.110 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.107 4.107 18 H 0.254 0.746 19 H 0.384 0.616 20 H 0.015 0.985 21 H 0.016 0.984 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -14.242 1.631 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.027 3.973 11 C -0.113 4.113 12 C -0.147 4.147 13 C -0.155 4.155 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.145 4.145 18 H 0.064 0.936 19 H 0.218 0.782 20 H 0.033 0.967 21 H 0.034 0.966 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.082 -14.119 1.641 14.215 hybrid contribution 0.154 0.980 -0.020 0.992 sum 0.237 -13.139 1.621 13.241 Atomic orbital electron populations 1.69663 1.05075 1.25504 1.58148 1.24729 0.95524 0.97620 1.03328 0.86192 0.78635 0.83942 0.77471 1.21802 1.21813 1.20827 1.19264 0.91035 0.84358 1.42157 0.91311 1.42420 1.05894 1.00012 1.89284 1.20784 0.93323 0.85783 0.97421 1.20239 0.98084 0.94843 0.98108 1.21374 0.95323 1.01079 0.96959 1.21368 0.98472 0.94339 1.01360 1.21913 0.96860 0.96188 1.00290 1.21327 0.97608 0.99138 0.97342 1.21320 0.99604 0.97539 0.96902 1.20473 0.98049 0.94367 1.01646 0.93611 0.78170 0.96718 0.96571 0.91625 0.92495 0.90351 0.92261 0.92637 0.92928 0.92775 0.93081 0.92114 0.91744 0.92543 0.92536 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -19.23 5.08 -59.90 -0.30 -19.53 16 10 C 0.15 3.28 5.56 -4.04 -0.02 3.26 16 11 C -0.09 -1.60 1.75 -93.49 -0.16 -1.77 16 12 C -0.11 -1.82 4.88 -27.30 -0.13 -1.96 16 13 C -0.12 -1.68 5.32 -27.40 -0.15 -1.83 16 14 C -0.11 -1.37 5.85 -25.62 -0.15 -1.52 16 15 C -0.12 -1.34 5.31 -27.43 -0.15 -1.48 16 16 C -0.12 -1.40 5.61 -27.34 -0.15 -1.55 16 17 C -0.11 -1.51 4.44 -29.60 -0.13 -1.64 16 18 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 19 H 0.38 10.52 6.88 -40.82 -0.28 10.24 16 20 H 0.02 0.32 8.05 -51.93 -0.42 -0.10 16 21 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.07 1.18 7.46 -51.93 -0.39 0.80 16 23 H 0.06 0.90 6.97 -51.92 -0.36 0.53 16 24 H 0.08 1.56 6.81 -51.93 -0.35 1.20 16 25 H 0.06 0.86 6.63 -51.93 -0.34 0.52 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.72 6.62 -51.93 -0.34 0.38 16 31 H 0.06 0.80 6.98 -51.93 -0.36 0.44 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 34 H 0.06 0.80 7.46 -51.92 -0.39 0.41 16 LS Contribution 260.12 15.07 3.92 3.92 Total: -1.00 -30.24 260.12 -7.71 -37.96 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.74 Total: 4.01 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -1.29 Total: -16.08 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.42 Total: -47.69 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.24 -7.71 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223577428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.245 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds