Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 N 1.46903 * 109.47432 * 240.00079 * 2 1 3 5 5 C 1.46903 * 110.99415 * 59.99667 * 4 2 1 6 6 C 1.53002 * 109.46473 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46993 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00026 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00181 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99658 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00154 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46753 * 60.00447 * 11 9 7 13 13 H 1.48506 * 109.47198 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47338 * 300.00580 * 11 9 7 15 15 C 1.53003 * 109.47267 * 119.99875 * 2 1 3 16 16 C 1.53001 * 117.51964 * 236.28555 * 15 2 1 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 2 18 18 H 1.09004 * 109.47051 * 299.99965 * 1 2 3 19 19 H 1.08991 * 109.47188 * 59.99959 * 1 2 3 20 20 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47344 * 180.02562 * 3 2 1 22 22 H 1.09003 * 109.47562 * 299.99950 * 3 2 1 23 23 H 1.09004 * 109.47159 * 60.00101 * 3 2 1 24 24 H 1.00897 * 110.99599 * 296.04897 * 4 2 1 25 25 H 1.08992 * 109.47507 * 299.99703 * 5 4 2 26 26 H 1.09000 * 109.47527 * 60.00712 * 5 4 2 27 27 H 1.09006 * 109.47148 * 299.99878 * 6 5 4 28 28 H 1.08997 * 109.47550 * 60.00100 * 6 5 4 29 29 H 0.97002 * 119.99417 * 179.97438 * 10 9 7 30 30 H 1.09002 * 115.54973 * 90.58338 * 15 2 1 31 31 H 1.09001 * 117.49733 * 214.97413 * 16 15 2 32 32 H 1.08995 * 117.49577 * 359.97438 * 16 15 2 33 33 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 34 34 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.5486 -0.0263 -2.4210 6 6 2.0772 -0.7749 -3.6462 7 6 1.5945 -0.0912 -4.8995 8 1 0.9732 0.7894 -4.8291 9 6 1.9469 -0.5892 -6.1359 10 7 2.7047 -1.6607 -6.2216 11 14 1.3480 0.2578 -7.6894 12 1 1.8431 1.6577 -7.7121 13 1 1.8611 -0.4686 -8.8786 14 1 -0.1368 0.2576 -7.7123 15 6 2.0400 -0.7212 1.2493 16 6 2.9858 0.0485 2.1734 17 6 1.5432 -0.2199 2.6068 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 3.1299 1.4425 -0.0005 22 1 1.6767 1.9564 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 1.7503 -1.6648 -1.1909 25 1 0.4588 -0.0266 -2.4379 26 1 1.9121 1.0012 -2.4379 27 1 3.1672 -0.7750 -3.6297 28 1 1.7135 -1.8022 -3.6293 29 1 2.9523 -2.0112 -7.0915 30 1 2.2062 -1.7928 1.1386 31 1 3.7741 -0.5166 2.6706 32 1 3.2451 1.0689 1.8912 33 1 0.8532 0.6240 2.6098 34 1 1.3825 -0.9617 3.3891 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226671685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = 11.085418 kcal Electronic energy + Delta-G solvation = -12686.789715 eV Core-core repulsion = 10619.921019 eV Total energy + Delta-G solvation = -2066.868696 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.04568 -35.42790 -33.03062 -30.74688 -28.05778 -27.21713 -24.69182 -22.66336 -22.12229 -20.23003 -18.37078 -16.51290 -16.02897 -14.91061 -14.49249 -14.38572 -13.89386 -13.03999 -12.77602 -12.66104 -12.13790 -11.94003 -11.56169 -11.29502 -11.06574 -11.01938 -10.82612 -10.57925 -10.37419 -10.21686 -9.94966 -9.78641 -9.29469 -9.10047 -8.31922 -7.67968 -5.96730 -3.99186 3.35106 3.39341 3.41734 3.89194 4.45153 4.63637 4.88287 5.04163 5.17615 5.35041 5.39042 5.40835 5.61371 5.66409 5.81270 5.89975 5.94776 6.01753 6.17626 6.20526 6.27635 6.37410 6.48830 6.52035 6.63296 7.06903 7.58804 7.78506 7.89019 8.04123 8.14259 8.47820 9.08132 9.64306 11.14729 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.074977 B = 0.006596 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.358269 B = 4243.672751 C = 4350.293438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.137 3.863 3 C -0.140 4.140 4 N -0.679 5.679 5 C 0.062 3.938 6 C 0.025 3.975 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 C -0.131 4.131 16 C -0.180 4.180 17 C -0.184 4.184 18 H 0.053 0.947 19 H 0.061 0.939 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.335 0.665 25 H 0.018 0.982 26 H 0.060 0.940 27 H 0.024 0.976 28 H 0.012 0.988 29 H 0.261 0.739 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 3.176 14.452 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.046 3.954 3 C -0.197 4.197 4 N -0.309 5.309 5 C -0.066 4.066 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.150 4.150 16 C -0.217 4.217 17 C -0.222 4.222 18 H 0.072 0.928 19 H 0.080 0.920 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.153 0.847 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.893 3.384 14.308 14.825 hybrid contribution -1.267 0.069 -0.926 1.571 sum -3.160 3.453 13.382 14.177 Atomic orbital electron populations 1.22528 0.97483 1.01800 1.01875 1.20362 0.91513 0.94020 0.89532 1.21972 1.01875 0.94841 1.01042 1.60742 1.63216 1.05777 1.01147 1.22235 0.96267 0.98760 0.89336 1.19064 0.97170 0.95038 0.89947 1.21148 1.31556 1.12233 0.91058 0.92887 1.25000 0.95182 0.95059 0.99108 1.69968 1.36489 1.22388 1.24461 0.86658 0.79037 0.79650 0.82633 1.20235 1.21271 1.20324 1.22248 1.03385 0.99254 0.90078 1.23081 0.92790 1.02128 1.03663 1.22950 0.97710 1.03470 0.98039 0.92793 0.91976 0.92886 0.91644 0.92219 0.93121 0.84742 0.96339 0.92116 0.95749 0.96932 0.92970 0.87923 0.89363 0.88191 0.89054 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.01 37.16 0.30 -2.20 16 2 C 0.14 2.04 0.82 -131.60 -0.11 1.93 16 3 C -0.14 -2.01 6.81 37.16 0.25 -1.75 16 4 N -0.68 -12.39 6.09 -99.96 -0.61 -12.99 16 5 C 0.06 1.32 4.84 -3.82 -0.02 1.31 16 6 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -27.30 13.29 55.43 0.74 -26.57 16 11 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C -0.13 -1.70 5.44 -90.61 -0.49 -2.20 16 16 C -0.18 -2.07 9.50 -26.73 -0.25 -2.33 16 17 C -0.18 -1.99 9.40 -26.73 -0.25 -2.24 16 18 H 0.05 0.66 7.00 -51.93 -0.36 0.29 16 19 H 0.06 0.95 6.40 -51.93 -0.33 0.62 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.06 0.97 7.23 -51.93 -0.38 0.59 16 22 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16 23 H 0.05 0.61 7.18 -51.93 -0.37 0.24 16 24 H 0.33 5.98 8.71 -39.29 -0.34 5.64 16 25 H 0.02 0.39 6.30 -51.93 -0.33 0.06 16 26 H 0.06 1.31 6.30 -51.93 -0.33 0.98 16 27 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.10 1.36 8.13 -51.93 -0.42 0.93 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.15 5.82 -51.93 -0.30 0.84 16 33 H 0.09 0.95 7.08 -51.93 -0.37 0.58 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 268.18 15.07 4.04 4.04 Total: -1.00 -29.85 268.18 -7.50 -37.35 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.52 Total: 1.97 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.13 Total: -20.69 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.13 Total: -39.56 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.85 -7.50 -37.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226671685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.440 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds