Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 N 1.46903 * 109.47432 * 240.00079 * 2 1 3 5 5 C 1.46903 * 110.99415 * 59.99667 * 4 2 1 6 6 C 1.53002 * 109.46473 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46993 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00026 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00181 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99658 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00154 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46753 * 60.00447 * 11 9 7 13 13 H 1.48506 * 109.47198 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47338 * 300.00580 * 11 9 7 15 15 C 1.53003 * 109.47267 * 119.99875 * 2 1 3 16 16 C 1.53001 * 117.51964 * 236.28555 * 15 2 1 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 2 18 18 H 1.09004 * 109.47051 * 299.99965 * 1 2 3 19 19 H 1.08991 * 109.47188 * 59.99959 * 1 2 3 20 20 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47344 * 180.02562 * 3 2 1 22 22 H 1.09003 * 109.47562 * 299.99950 * 3 2 1 23 23 H 1.09004 * 109.47159 * 60.00101 * 3 2 1 24 24 H 1.00897 * 110.99599 * 296.04897 * 4 2 1 25 25 H 1.08992 * 109.47507 * 299.99703 * 5 4 2 26 26 H 1.09000 * 109.47527 * 60.00712 * 5 4 2 27 27 H 1.09006 * 109.47148 * 299.99878 * 6 5 4 28 28 H 1.08997 * 109.47550 * 60.00100 * 6 5 4 29 29 H 0.97002 * 119.99417 * 179.97438 * 10 9 7 30 30 H 1.09002 * 115.54973 * 90.58338 * 15 2 1 31 31 H 1.09001 * 117.49733 * 214.97413 * 16 15 2 32 32 H 1.08995 * 117.49577 * 359.97438 * 16 15 2 33 33 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 34 34 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.5486 -0.0263 -2.4210 6 6 2.0772 -0.7749 -3.6462 7 6 1.5945 -0.0912 -4.8995 8 1 0.9732 0.7894 -4.8291 9 6 1.9469 -0.5892 -6.1359 10 7 2.7047 -1.6607 -6.2216 11 14 1.3480 0.2578 -7.6894 12 1 1.8431 1.6577 -7.7121 13 1 1.8611 -0.4686 -8.8786 14 1 -0.1368 0.2576 -7.7123 15 6 2.0400 -0.7212 1.2493 16 6 2.9858 0.0485 2.1734 17 6 1.5432 -0.2199 2.6068 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 3.1299 1.4425 -0.0005 22 1 1.6767 1.9564 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 1.7503 -1.6648 -1.1909 25 1 0.4588 -0.0266 -2.4379 26 1 1.9121 1.0012 -2.4379 27 1 3.1672 -0.7750 -3.6297 28 1 1.7135 -1.8022 -3.6293 29 1 2.9523 -2.0112 -7.0915 30 1 2.2062 -1.7928 1.1386 31 1 3.7741 -0.5166 2.6706 32 1 3.2451 1.0689 1.8912 33 1 0.8532 0.6240 2.6098 34 1 1.3825 -0.9617 3.3891 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226671685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = -7.692853 kcal Electronic energy + Delta-G solvation = -12687.604002 eV Core-core repulsion = 10619.921019 eV Total energy + Delta-G solvation = -2067.682983 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.19388 -36.83203 -35.03596 -32.43914 -29.75029 -28.37065 -26.47429 -24.18525 -22.98642 -21.97917 -19.58210 -18.47272 -17.42931 -16.46614 -16.17985 -15.79570 -15.20492 -14.56470 -14.18293 -14.14231 -13.69215 -13.34208 -13.08071 -12.76681 -12.69182 -12.48005 -12.30025 -12.10930 -11.70624 -11.54826 -11.43278 -11.30093 -10.98317 -10.83937 -10.55412 -9.16591 -8.20127 -6.31941 1.39879 1.43469 1.51440 2.40532 2.92948 3.13050 3.40094 3.77979 4.05237 4.19091 4.23023 4.36937 4.50074 4.53875 4.65039 4.73686 4.77366 4.86830 4.95252 5.02743 5.06427 5.13401 5.28095 5.33419 5.35754 5.44403 5.48015 5.69325 5.81563 6.17912 6.36582 6.60522 6.85532 7.37360 8.91983 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.074977 B = 0.006596 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.358269 B = 4243.672751 C = 4350.293438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.135 3.865 3 C -0.138 4.138 4 N -0.687 5.687 5 C 0.084 3.916 6 C 0.032 3.968 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.000 4.000 10 N -0.933 5.933 11 Si 0.968 3.032 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.266 1.266 15 C -0.152 4.152 16 C -0.180 4.180 17 C -0.163 4.163 18 H 0.077 0.923 19 H 0.045 0.955 20 H 0.051 0.949 21 H 0.057 0.943 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.335 0.665 25 H 0.021 0.979 26 H 0.059 0.941 27 H -0.009 1.009 28 H -0.011 1.011 29 H 0.264 0.736 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 4.281 15.382 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.044 3.956 3 C -0.195 4.195 4 N -0.317 5.317 5 C -0.045 4.045 6 C -0.006 4.006 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.198 4.198 10 N -0.572 5.572 11 Si 0.792 3.208 12 H -0.191 1.191 13 H -0.207 1.207 14 H -0.191 1.191 15 C -0.171 4.171 16 C -0.217 4.217 17 C -0.200 4.200 18 H 0.096 0.904 19 H 0.064 0.936 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.153 0.847 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.010 0.990 28 H 0.007 0.993 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.836 4.498 15.264 16.164 hybrid contribution -0.939 -0.308 -1.151 1.517 sum -3.776 4.190 14.113 15.198 Atomic orbital electron populations 1.22465 0.96608 1.01891 1.02215 1.20488 0.92254 0.94171 0.88706 1.21968 1.01377 0.94551 1.01606 1.60669 1.63729 1.05937 1.01384 1.21809 0.95999 0.97893 0.88795 1.18925 0.94999 0.94383 0.92273 1.21586 1.31866 1.12688 0.92233 0.92215 1.25993 0.95100 0.95669 1.02995 1.70111 1.37633 1.23956 1.25549 0.85468 0.78922 0.78673 0.77775 1.19125 1.20724 1.19099 1.22140 1.05727 0.98918 0.90266 1.23162 0.93627 1.01970 1.02953 1.23034 0.97074 1.03584 0.96310 0.90397 0.93589 0.92951 0.92427 0.93734 0.90431 0.84725 0.96061 0.92288 0.99023 0.99287 0.92735 0.88546 0.88558 0.88131 0.88133 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.56 8.01 71.98 0.58 -3.99 16 2 C 0.13 3.85 0.82 3.53 0.00 3.85 16 3 C -0.14 -3.75 6.81 71.98 0.49 -3.26 16 4 N -0.69 -25.30 6.09 -470.17 -2.86 -28.16 16 5 C 0.08 3.64 4.84 86.30 0.42 4.05 16 6 C 0.03 1.75 5.23 29.85 0.16 1.90 16 7 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.00 0.02 5.46 84.65 0.46 0.48 16 10 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 11 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 C -0.15 -3.68 5.44 -10.79 -0.06 -3.74 16 16 C -0.18 -3.73 9.50 30.59 0.29 -3.44 16 17 C -0.16 -2.98 9.40 30.60 0.29 -2.69 16 18 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16 19 H 0.05 1.35 6.40 -2.39 -0.02 1.34 16 20 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.65 7.23 -2.39 -0.02 1.63 16 22 H 0.04 1.33 6.40 -2.39 -0.02 1.32 16 23 H 0.08 1.67 7.18 -2.39 -0.02 1.66 16 24 H 0.34 12.21 8.71 -89.70 -0.78 11.43 16 25 H 0.02 0.91 6.30 -2.39 -0.02 0.89 16 26 H 0.06 2.57 6.30 -2.39 -0.02 2.56 16 27 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 28 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.10 2.45 8.13 -2.39 -0.02 2.43 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 2.07 5.82 -2.39 -0.01 2.06 16 33 H 0.10 1.68 7.08 -2.39 -0.02 1.66 16 34 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -64.25 268.18 2.59 -61.66 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.29 Total: 15.84 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 2.86 Total: -38.48 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.58 Total: -85.91 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.25 2.59 -61.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226671685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.968 kcal (2) G-P(sol) polarization free energy of solvation -64.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds