Wall clock time and date at job start Mon Mar 30 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47415 * 2 1 4 4 C 1.53001 * 115.55704 * 279.38671 * 3 2 1 5 5 N 1.46894 * 109.47223 * 320.28494 * 4 3 2 6 6 C 1.46907 * 111.00136 * 185.88232 * 5 4 3 7 7 H 1.08998 * 109.46711 * 324.99614 * 6 5 4 8 8 C 1.52993 * 109.47379 * 84.99666 * 6 5 4 9 9 C 1.50699 * 109.46980 * 205.00186 * 6 5 4 10 10 H 1.07993 * 120.00226 * 359.97438 * 9 6 5 11 11 C 1.37884 * 119.99795 * 179.97438 * 9 6 5 12 12 N 1.31515 * 119.99933 * 0.02562 * 11 9 6 13 13 Si 1.86796 * 119.99875 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47347 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46809 * 120.00096 * 13 11 9 16 16 H 1.48499 * 109.47118 * 240.00168 * 13 11 9 17 17 C 1.52997 * 117.49739 * 65.06798 * 3 2 1 18 18 C 1.52989 * 117.50285 * 133.69489 * 3 2 1 19 19 H 1.08999 * 109.47177 * 294.87942 * 1 2 3 20 20 H 1.09000 * 109.47107 * 54.88342 * 1 2 3 21 21 H 1.08997 * 109.47531 * 174.88404 * 1 2 3 22 22 H 1.09005 * 109.47153 * 240.00221 * 2 1 3 23 23 H 1.08993 * 109.47316 * 119.99904 * 2 1 3 24 24 H 1.09003 * 109.47297 * 80.29128 * 4 3 2 25 25 H 1.09009 * 109.46817 * 200.28630 * 4 3 2 26 26 H 1.00901 * 111.00379 * 61.92637 * 5 4 3 27 27 H 1.08998 * 109.47241 * 60.00274 * 8 6 5 28 28 H 1.09001 * 109.47382 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47044 * 300.00297 * 8 6 5 30 30 H 0.96994 * 119.99865 * 180.02562 * 12 11 9 31 31 H 1.09000 * 117.49938 * 0.02562 * 17 3 2 32 32 H 1.09002 * 117.50059 * 214.97953 * 17 3 2 33 33 H 1.09000 * 117.50568 * 145.02106 * 18 3 2 34 34 H 1.09005 * 117.51830 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0478 2.1399 -1.3618 5 7 2.4824 1.1909 -2.3954 6 6 2.6364 1.8606 -3.6939 7 1 1.8785 2.6375 -3.7940 8 6 4.0276 2.4911 -3.7807 9 6 2.4716 0.8524 -4.8018 10 1 2.2729 -0.1824 -4.5651 11 6 2.5746 1.2511 -6.1176 12 7 2.8172 2.5112 -6.4059 13 14 2.3711 0.0013 -7.4909 14 1 2.1077 -1.3381 -6.9063 15 1 1.2299 0.3968 -8.3550 16 1 3.6132 -0.0482 -8.3032 17 6 1.7362 2.2992 1.2307 18 6 3.1594 1.7961 0.9811 19 1 -0.3633 0.4323 0.9323 20 1 -0.3633 0.5912 -0.8406 21 1 -0.3634 -1.0235 -0.0916 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.0438 2.4953 -1.5938 25 1 2.7350 2.9856 -1.3330 26 1 1.8437 0.4127 -2.4635 27 1 4.7855 1.7142 -3.6806 28 1 4.1417 2.9884 -4.7439 29 1 4.1467 3.2203 -2.9794 30 1 2.8892 2.7917 -7.3315 31 1 1.1733 1.8351 2.0405 32 1 1.5420 3.3597 1.0702 33 1 3.9015 2.5255 0.6566 34 1 3.5325 1.0013 1.6272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226773610.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:46 Heat of formation + Delta-G solvation = 8.658188 kcal Electronic energy + Delta-G solvation = -12838.866779 eV Core-core repulsion = 10771.892830 eV Total energy + Delta-G solvation = -2066.973948 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.41470 -35.23333 -32.28148 -31.49686 -28.69932 -25.40723 -24.40528 -23.48319 -21.97823 -19.74603 -18.34192 -16.55424 -15.24697 -15.09138 -14.44285 -13.81153 -13.49025 -13.20893 -12.96350 -12.32781 -11.91720 -11.78921 -11.41129 -11.20763 -10.99375 -10.79315 -10.73578 -10.39338 -10.23958 -10.10920 -9.98221 -9.68152 -9.30063 -8.76988 -8.45268 -7.17768 -6.00794 -4.06938 3.29611 3.37352 3.41661 4.06791 4.41932 4.93142 5.08835 5.19674 5.30578 5.31020 5.63244 5.66553 5.82876 5.85167 5.89471 6.10528 6.17253 6.22259 6.36611 6.38600 6.50396 6.59582 6.72867 6.92791 7.18177 7.27790 7.55504 7.80973 7.93611 8.30915 8.44640 8.72827 9.04814 9.58996 11.05693 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048870 B = 0.008491 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.811011 B = 3296.750050 C = 3658.978590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.107 4.107 4 C 0.098 3.902 5 N -0.685 5.685 6 C 0.210 3.790 7 H -0.001 1.001 8 C -0.123 4.123 9 C -0.516 4.516 10 H 0.060 0.940 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.184 4.184 18 C -0.170 4.170 19 H 0.047 0.953 20 H 0.055 0.945 21 H 0.050 0.950 22 H 0.082 0.918 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.063 0.937 26 H 0.330 0.670 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.003 0.997 30 H 0.260 0.740 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.538 -1.880 11.288 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.032 4.032 5 N -0.317 5.317 6 C 0.102 3.898 7 H 0.017 0.983 8 C -0.182 4.182 9 C -0.555 4.555 10 H 0.078 0.922 11 C -0.141 4.141 12 N -0.529 5.529 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.222 4.222 18 C -0.207 4.207 19 H 0.067 0.933 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.149 0.851 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.022 0.978 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.844 -1.702 11.271 11.547 hybrid contribution -0.956 -0.356 -1.012 1.437 sum -2.799 -2.058 10.259 10.832 Atomic orbital electron populations 1.21725 0.96108 1.01088 1.01561 1.21048 0.95155 0.93929 1.02458 1.21536 1.02052 0.95790 0.91328 1.21359 0.97463 0.94986 0.89397 1.60714 1.52643 1.10482 1.07864 1.19098 0.93457 0.93148 0.84049 0.98341 1.21703 0.98225 0.98002 1.00225 1.21306 1.48593 0.94937 0.90619 0.92204 1.24930 0.95102 0.95303 0.98758 1.69912 1.49281 1.15157 1.18588 0.86475 0.77635 0.81542 0.81952 1.19750 1.21127 1.20977 1.22967 0.99347 0.99713 1.00127 1.23008 0.91545 1.03231 1.02929 0.93341 0.92569 0.93088 0.89933 0.92694 0.96209 0.91849 0.85126 0.94981 0.90195 0.97833 0.93022 0.89375 0.89315 0.89072 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.74 37.15 0.36 -1.55 16 2 C -0.09 -1.26 5.57 -26.73 -0.15 -1.41 16 3 C -0.11 -1.64 1.92 -154.51 -0.30 -1.94 16 4 C 0.10 1.84 5.58 -3.83 -0.02 1.82 16 5 N -0.68 -14.95 5.87 -107.95 -0.63 -15.59 16 6 C 0.21 5.44 2.60 -68.86 -0.18 5.26 16 7 H 0.00 -0.03 7.86 -51.93 -0.41 -0.44 16 8 C -0.12 -3.15 9.19 37.15 0.34 -2.81 16 9 C -0.52 -14.36 8.59 -34.44 -0.30 -14.65 16 10 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 11 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 12 N -0.89 -25.77 11.32 55.43 0.63 -25.15 16 13 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C -0.18 -2.41 9.61 -26.73 -0.26 -2.66 16 18 C -0.17 -2.38 9.82 -26.74 -0.26 -2.64 16 19 H 0.05 0.57 7.83 -51.93 -0.41 0.16 16 20 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.08 1.31 6.19 -51.93 -0.32 0.99 16 23 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 1.24 7.12 -51.92 -0.37 0.87 16 26 H 0.33 7.03 6.45 -39.29 -0.25 6.77 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 29 H 0.00 0.06 7.38 -51.93 -0.38 -0.32 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.09 1.03 7.99 -51.93 -0.42 0.61 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 34 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 LS Contribution 273.60 15.07 4.12 4.12 Total: -1.00 -28.33 273.60 -7.53 -35.86 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.77 Total: 3.29 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -0.85 Total: -18.97 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.01 Total: -40.73 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.33 -7.53 -35.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226773610.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.518 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds