Wall clock time and date at job start Mon Mar 30 2020 01:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47415 * 2 1 4 4 C 1.53001 * 115.55704 * 279.38671 * 3 2 1 5 5 N 1.46894 * 109.47223 * 320.28494 * 4 3 2 6 6 C 1.46907 * 111.00136 * 185.88232 * 5 4 3 7 7 H 1.08998 * 109.46711 * 324.99614 * 6 5 4 8 8 C 1.52993 * 109.47379 * 84.99666 * 6 5 4 9 9 C 1.50699 * 109.46980 * 205.00186 * 6 5 4 10 10 H 1.07993 * 120.00226 * 359.97438 * 9 6 5 11 11 C 1.37884 * 119.99795 * 179.97438 * 9 6 5 12 12 N 1.31515 * 119.99933 * 0.02562 * 11 9 6 13 13 Si 1.86796 * 119.99875 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47347 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46809 * 120.00096 * 13 11 9 16 16 H 1.48499 * 109.47118 * 240.00168 * 13 11 9 17 17 C 1.52997 * 117.49739 * 65.06798 * 3 2 1 18 18 C 1.52989 * 117.50285 * 133.69489 * 3 2 1 19 19 H 1.08999 * 109.47177 * 294.87942 * 1 2 3 20 20 H 1.09000 * 109.47107 * 54.88342 * 1 2 3 21 21 H 1.08997 * 109.47531 * 174.88404 * 1 2 3 22 22 H 1.09005 * 109.47153 * 240.00221 * 2 1 3 23 23 H 1.08993 * 109.47316 * 119.99904 * 2 1 3 24 24 H 1.09003 * 109.47297 * 80.29128 * 4 3 2 25 25 H 1.09009 * 109.46817 * 200.28630 * 4 3 2 26 26 H 1.00901 * 111.00379 * 61.92637 * 5 4 3 27 27 H 1.08998 * 109.47241 * 60.00274 * 8 6 5 28 28 H 1.09001 * 109.47382 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47044 * 300.00297 * 8 6 5 30 30 H 0.96994 * 119.99865 * 180.02562 * 12 11 9 31 31 H 1.09000 * 117.49938 * 0.02562 * 17 3 2 32 32 H 1.09002 * 117.50059 * 214.97953 * 17 3 2 33 33 H 1.09000 * 117.50568 * 145.02106 * 18 3 2 34 34 H 1.09005 * 117.51830 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0478 2.1399 -1.3618 5 7 2.4824 1.1909 -2.3954 6 6 2.6364 1.8606 -3.6939 7 1 1.8785 2.6375 -3.7940 8 6 4.0276 2.4911 -3.7807 9 6 2.4716 0.8524 -4.8018 10 1 2.2729 -0.1824 -4.5651 11 6 2.5746 1.2511 -6.1176 12 7 2.8172 2.5112 -6.4059 13 14 2.3711 0.0013 -7.4909 14 1 2.1077 -1.3381 -6.9063 15 1 1.2299 0.3968 -8.3550 16 1 3.6132 -0.0482 -8.3032 17 6 1.7362 2.2992 1.2307 18 6 3.1594 1.7961 0.9811 19 1 -0.3633 0.4323 0.9323 20 1 -0.3633 0.5912 -0.8406 21 1 -0.3634 -1.0235 -0.0916 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.0438 2.4953 -1.5938 25 1 2.7350 2.9856 -1.3330 26 1 1.8437 0.4127 -2.4635 27 1 4.7855 1.7142 -3.6806 28 1 4.1417 2.9884 -4.7439 29 1 4.1467 3.2203 -2.9794 30 1 2.8892 2.7917 -7.3315 31 1 1.1733 1.8351 2.0405 32 1 1.5420 3.3597 1.0702 33 1 3.9015 2.5255 0.6566 34 1 3.5325 1.0013 1.6272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226773610.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:46 Heat of formation + Delta-G solvation = -7.924447 kcal Electronic energy + Delta-G solvation = -12839.585856 eV Core-core repulsion = 10771.892830 eV Total energy + Delta-G solvation = -2067.693025 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.68537 -37.08444 -34.26207 -32.60252 -30.60938 -27.46319 -26.09450 -24.65106 -23.05913 -21.75650 -19.66948 -18.47493 -17.01883 -16.48178 -16.12888 -15.35766 -15.08422 -14.74288 -14.35525 -13.81175 -13.60915 -13.14256 -12.95464 -12.83885 -12.69804 -12.39118 -12.32834 -12.19331 -12.08699 -11.72405 -11.44230 -11.07172 -10.77206 -10.61537 -10.46012 -9.01109 -8.14401 -6.28815 1.40857 1.42361 1.54587 2.40807 2.92672 3.14123 3.62924 3.89010 3.98710 4.14159 4.24792 4.54520 4.64908 4.73873 4.78888 4.80580 4.84826 4.92246 5.05935 5.07346 5.18298 5.21022 5.33878 5.35363 5.42298 5.47115 5.55674 5.66718 5.84984 6.21005 6.48074 6.78377 7.00538 7.41847 8.91806 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048870 B = 0.008491 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.811011 B = 3296.750050 C = 3658.978590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.127 4.127 4 C 0.101 3.899 5 N -0.680 5.680 6 C 0.213 3.787 7 H -0.035 1.035 8 C -0.111 4.111 9 C -0.536 4.536 10 H 0.060 0.940 11 C 0.011 3.989 12 N -0.919 5.919 13 Si 0.965 3.035 14 H -0.265 1.265 15 H -0.280 1.280 16 H -0.279 1.279 17 C -0.162 4.162 18 C -0.169 4.169 19 H 0.064 0.936 20 H 0.035 0.965 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.010 0.990 25 H 0.052 0.948 26 H 0.333 0.667 27 H 0.028 0.972 28 H 0.057 0.943 29 H 0.018 0.982 30 H 0.263 0.737 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -2.947 12.440 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.128 4.128 4 C -0.029 4.029 5 N -0.312 5.312 6 C 0.105 3.895 7 H -0.018 1.018 8 C -0.170 4.170 9 C -0.575 4.575 10 H 0.078 0.922 11 C -0.188 4.188 12 N -0.559 5.559 13 Si 0.790 3.210 14 H -0.190 1.190 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.200 4.200 18 C -0.206 4.206 19 H 0.083 0.917 20 H 0.054 0.946 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.152 0.848 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.154 -2.772 12.444 12.930 hybrid contribution -0.860 0.026 -1.328 1.583 sum -3.014 -2.747 11.116 11.841 Atomic orbital electron populations 1.21696 0.95186 1.01651 1.01553 1.21016 0.95958 0.92992 1.02306 1.21432 1.04599 0.96734 0.89993 1.21342 0.96366 0.94482 0.90677 1.60652 1.53125 1.10832 1.06558 1.18923 0.92499 0.92240 0.85874 1.01751 1.21524 0.97952 0.97967 0.99516 1.21609 1.48982 0.95242 0.91629 0.92225 1.25774 0.94611 0.97200 1.01197 1.70037 1.49691 1.16893 1.19237 0.85407 0.77668 0.79252 0.78694 1.18956 1.20572 1.20511 1.23045 0.98656 0.99550 0.98731 1.23085 0.91719 1.03529 1.02267 0.91679 0.94564 0.91900 0.92098 0.90737 0.97174 0.92980 0.84813 0.95298 0.92452 0.96274 0.92818 0.87071 0.89144 0.89898 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.74 71.98 0.70 -2.74 16 2 C -0.09 -2.28 5.57 30.59 0.17 -2.11 16 3 C -0.13 -3.72 1.92 -52.18 -0.10 -3.82 16 4 C 0.10 3.82 5.58 86.30 0.48 4.30 16 5 N -0.68 -30.02 5.87 -495.44 -2.91 -32.93 16 6 C 0.21 11.30 2.60 44.17 0.11 11.42 16 7 H -0.04 -2.06 7.86 -2.39 -0.02 -2.08 16 8 C -0.11 -5.78 9.19 71.98 0.66 -5.12 16 9 C -0.54 -30.18 8.59 25.60 0.22 -29.96 16 10 H 0.06 3.28 7.62 -2.91 -0.02 3.26 16 11 C 0.01 0.63 5.30 84.66 0.45 1.08 16 12 N -0.92 -53.94 11.32 21.45 0.24 -53.70 16 13 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 17 C -0.16 -3.80 9.61 30.59 0.29 -3.50 16 18 C -0.17 -4.34 9.82 30.59 0.30 -4.04 16 19 H 0.06 1.33 7.83 -2.39 -0.02 1.31 16 20 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.88 6.19 -2.38 -0.01 1.87 16 23 H 0.07 1.70 7.94 -2.39 -0.02 1.68 16 24 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.05 2.05 7.12 -2.38 -0.02 2.03 16 26 H 0.33 14.35 6.45 -89.69 -0.58 13.77 16 27 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 29 H 0.02 0.88 7.38 -2.39 -0.02 0.86 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.11 2.13 7.99 -2.39 -0.02 2.11 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.26 8.08 -2.39 -0.02 2.24 16 34 H 0.10 2.33 8.08 -2.38 -0.02 2.31 16 Total: -1.00 -60.20 273.60 3.13 -57.07 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.47 Total: 18.04 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 3.29 Total: -34.48 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -2.66 Total: -86.62 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -60.20 3.13 -57.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226773610.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.142 kcal (2) G-P(sol) polarization free energy of solvation -60.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds