Wall clock time and date at job start Mon Mar 30 2020 01:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46863 * 2 1 4 4 C 1.52994 * 115.55335 * 65.32095 * 3 2 1 5 5 N 1.46906 * 109.46761 * 61.05075 * 4 3 2 6 6 C 1.46905 * 110.99581 * 185.08043 * 5 4 3 7 7 H 1.09000 * 109.47482 * 34.99563 * 6 5 4 8 8 C 1.53002 * 109.46768 * 274.99731 * 6 5 4 9 9 C 1.50700 * 109.46806 * 155.00197 * 6 5 4 10 10 H 1.07997 * 120.00174 * 95.18318 * 9 6 5 11 11 C 1.37877 * 119.99935 * 275.17825 * 9 6 5 12 12 N 1.31518 * 119.99632 * 355.30693 * 11 9 6 13 13 Si 1.86800 * 120.00191 * 175.30943 * 11 9 6 14 14 H 1.48495 * 109.47252 * 89.99774 * 13 11 9 15 15 H 1.48505 * 109.46888 * 210.00012 * 13 11 9 16 16 H 1.48496 * 109.46792 * 329.99589 * 13 11 9 17 17 C 1.53002 * 117.49566 * 210.99472 * 3 2 1 18 18 C 1.52998 * 117.49776 * 279.65122 * 3 2 1 19 19 H 1.09002 * 109.47321 * 64.89108 * 1 2 3 20 20 H 1.09000 * 109.46476 * 184.88742 * 1 2 3 21 21 H 1.08998 * 109.47196 * 304.88594 * 1 2 3 22 22 H 1.08996 * 109.47361 * 240.00005 * 2 1 3 23 23 H 1.09003 * 109.47398 * 119.99858 * 2 1 3 24 24 H 1.09000 * 109.47090 * 301.05482 * 4 3 2 25 25 H 1.09001 * 109.47600 * 181.04623 * 4 3 2 26 26 H 1.00889 * 111.00254 * 61.12703 * 5 4 3 27 27 H 1.09000 * 109.47254 * 295.08321 * 8 6 5 28 28 H 1.08997 * 109.47445 * 55.08801 * 8 6 5 29 29 H 1.09003 * 109.46938 * 175.08845 * 8 6 5 30 30 H 0.97000 * 120.00559 * 5.25781 * 12 11 9 31 31 H 1.09003 * 117.49546 * 214.99517 * 17 3 2 32 32 H 1.08994 * 117.49978 * 0.02562 * 17 3 2 33 33 H 1.09007 * 117.49689 * 359.97438 * 18 3 2 34 34 H 1.08995 * 117.50140 * 144.99680 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7165 2.2568 1.2542 5 7 2.3359 1.6203 2.4244 6 6 1.9476 2.3065 3.6640 7 1 0.9203 2.6603 3.5770 8 6 2.8787 3.4972 3.9009 9 6 2.0526 1.3484 4.8225 10 1 2.9492 1.3248 5.4241 11 6 1.0041 0.5020 5.1143 12 7 -0.1220 0.5939 4.4412 13 14 1.1829 -0.7751 6.4658 14 1 0.7464 -0.1913 7.7595 15 1 0.3405 -1.9555 6.1459 16 1 2.6041 -1.1938 6.5661 17 6 3.3723 1.7208 -0.6989 18 6 2.0609 2.1844 -1.3379 19 1 -0.3634 0.4361 -0.9306 20 1 -0.3632 -1.0240 0.0876 21 1 -0.3633 0.5878 0.8430 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 0.6361 2.2977 1.3923 25 1 2.1070 3.2682 1.1416 26 1 3.3397 1.5869 2.3289 27 1 3.8926 3.1367 4.0748 28 1 2.8690 4.1460 3.0251 29 1 2.5379 4.0573 4.7717 30 1 -0.1897 1.2037 3.6899 31 1 4.0183 2.4840 -0.2651 32 1 3.8852 0.8763 -1.1590 33 1 1.7117 1.6446 -2.2182 34 1 1.8442 3.2525 -1.3246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226773617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:47 Heat of formation + Delta-G solvation = -14.525473 kcal Electronic energy + Delta-G solvation = -13066.775611 eV Core-core repulsion = 10998.796343 eV Total energy + Delta-G solvation = -2067.979267 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.70135 -37.27189 -34.01750 -32.68138 -30.85895 -26.75183 -25.95485 -24.62580 -23.17871 -22.41688 -19.76726 -18.68665 -16.84691 -16.03324 -15.80836 -15.59365 -15.29515 -14.72671 -14.48044 -14.06673 -13.64351 -13.18044 -13.00933 -12.91087 -12.66887 -12.53317 -12.32540 -12.04783 -11.94332 -11.65779 -11.56747 -11.01460 -10.66890 -10.47249 -10.39222 -8.81882 -8.45571 -6.21426 1.55110 1.64779 1.81417 2.62317 2.87171 3.25608 3.72387 3.83062 4.02761 4.08113 4.25666 4.42921 4.51182 4.61403 4.64945 4.68717 4.74497 4.77027 4.78436 4.97243 5.02593 5.10435 5.16883 5.28094 5.28350 5.30334 5.51317 5.52998 6.05178 6.27670 6.62441 6.85598 6.93916 7.64338 8.90745 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036694 B = 0.010849 C = 0.009252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.889166 B = 2580.284748 C = 3025.511869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.128 4.128 4 C 0.103 3.897 5 N -0.677 5.677 6 C 0.188 3.812 7 H 0.006 0.994 8 C -0.151 4.151 9 C -0.595 4.595 10 H 0.039 0.961 11 C -0.017 4.017 12 N -0.929 5.929 13 Si 1.113 2.887 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.275 1.275 17 C -0.169 4.169 18 C -0.161 4.161 19 H 0.065 0.935 20 H 0.050 0.950 21 H 0.027 0.973 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.015 0.985 26 H 0.324 0.676 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.259 0.741 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 1.469 -9.824 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.129 4.129 4 C -0.027 4.027 5 N -0.307 5.307 6 C 0.081 3.919 7 H 0.025 0.975 8 C -0.211 4.211 9 C -0.634 4.634 10 H 0.057 0.943 11 C -0.218 4.218 12 N -0.566 5.566 13 Si 0.937 3.063 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.206 4.206 18 C -0.199 4.199 19 H 0.084 0.916 20 H 0.069 0.931 21 H 0.046 0.954 22 H 0.091 0.909 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.141 0.859 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.436 -0.157 -8.935 9.574 hybrid contribution 1.139 2.170 -0.707 2.551 sum 4.575 2.014 -9.641 10.860 Atomic orbital electron populations 1.21594 0.96152 1.00896 1.00850 1.20803 0.95440 0.93431 1.01025 1.21419 1.02231 0.96617 0.92602 1.21311 0.97835 0.93474 0.90049 1.61003 1.12710 1.56048 1.00989 1.19243 0.93260 0.90917 0.88462 0.97549 1.22250 1.00189 0.98779 0.99848 1.22164 1.04018 1.23251 1.13961 0.94290 1.27030 0.92150 0.99856 1.02748 1.70818 1.26620 1.38558 1.20577 0.82987 0.75938 0.74107 0.73285 1.20199 1.21367 1.20027 1.23042 0.90430 1.03474 1.03629 1.23065 1.00890 1.00424 0.95493 0.91610 0.93121 0.95408 0.90903 0.93529 0.94247 0.96680 0.85872 0.93311 0.93942 0.93691 0.93027 0.89334 0.87775 0.87316 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.83 71.98 0.71 -3.92 16 2 C -0.07 -2.30 5.71 30.59 0.17 -2.13 16 3 C -0.13 -4.07 1.74 -52.18 -0.09 -4.16 16 4 C 0.10 4.01 5.11 86.30 0.44 4.45 16 5 N -0.68 -30.68 5.87 -495.43 -2.91 -33.59 16 6 C 0.19 9.56 2.30 44.17 0.10 9.66 16 7 H 0.01 0.37 6.25 -2.39 -0.01 0.35 16 8 C -0.15 -6.43 9.16 71.98 0.66 -5.77 16 9 C -0.59 -33.79 8.64 25.60 0.22 -33.57 16 10 H 0.04 2.20 7.81 -2.91 -0.02 2.18 16 11 C -0.02 -1.01 5.45 84.65 0.46 -0.55 16 12 N -0.93 -57.50 13.62 21.45 0.29 -57.21 16 13 Si 1.11 51.72 29.91 68.60 2.05 53.77 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 16 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 17 C -0.17 -4.36 9.94 30.62 0.30 -4.05 16 18 C -0.16 -3.97 9.96 30.62 0.30 -3.67 16 19 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 20 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.03 1.11 6.87 -2.39 -0.02 1.10 16 22 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 23 H 0.05 1.85 7.92 -2.39 -0.02 1.84 16 24 H 0.04 1.73 6.81 -2.39 -0.02 1.72 16 25 H 0.02 0.56 7.45 -2.39 -0.02 0.54 16 26 H 0.32 13.83 8.53 -89.70 -0.77 13.06 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.59 7.44 -2.39 -0.02 1.57 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.26 16.33 6.66 -92.71 -0.62 15.72 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -62.82 277.55 3.16 -59.66 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.44 Total: 21.06 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 3.29 Total: -43.70 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -2.62 Total: -90.80 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.77 kcal Total: -62.82 3.16 -59.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226773617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.139 kcal (2) G-P(sol) polarization free energy of solvation -62.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds