Wall clock time and date at job start Mon Mar 30 2020 01:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 112.85060 * 2 1 4 4 C 1.46893 * 111.00194 * 311.20009 * 3 2 1 5 5 C 1.52999 * 109.47347 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47361 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47313 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99493 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00309 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00132 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00249 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47139 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.47321 * 120.00051 * 11 9 7 14 14 H 1.48498 * 109.47500 * 240.00035 * 11 9 7 15 15 C 1.53782 * 113.61446 * 131.20170 * 2 1 3 16 16 C 1.53781 * 87.08260 * 89.11378 * 15 2 1 17 17 C 1.53786 * 87.17350 * 25.39213 * 16 15 2 18 18 H 1.08998 * 109.47320 * 288.80453 * 1 2 3 19 19 H 1.08999 * 109.47324 * 48.80044 * 1 2 3 20 20 H 1.09006 * 109.47299 * 168.80067 * 1 2 3 21 21 H 1.00896 * 110.99524 * 75.15208 * 3 2 1 22 22 H 1.09006 * 109.47332 * 299.99826 * 4 3 2 23 23 H 1.09002 * 109.47593 * 59.99657 * 4 3 2 24 24 H 1.08997 * 109.47121 * 300.00115 * 5 4 3 25 25 H 1.09003 * 109.46817 * 59.99996 * 5 4 3 26 26 H 1.09006 * 109.47387 * 300.00111 * 6 5 4 27 27 H 1.08993 * 109.47303 * 59.99740 * 6 5 4 28 28 H 0.97003 * 120.00527 * 180.02562 * 10 9 7 29 29 H 1.09001 * 113.61250 * 334.56196 * 15 2 1 30 30 H 1.08997 * 113.61225 * 203.66037 * 15 2 1 31 31 H 1.09002 * 113.61445 * 139.98212 * 16 15 2 32 32 H 1.09002 * 113.61408 * 270.79943 * 16 15 2 33 33 H 1.08993 * 113.61491 * 89.15923 * 17 16 15 34 34 H 1.09000 * 113.61138 * 220.06261 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1004 1.3537 0.0000 4 6 1.4725 2.1896 -1.0318 5 6 2.0907 3.5888 -1.0007 6 6 1.4371 4.4593 -2.0758 7 6 2.0465 5.8372 -2.0456 8 1 2.8221 6.0690 -1.3306 9 6 1.6139 6.8019 -2.9305 10 7 0.6691 6.5199 -3.8007 11 14 2.3688 8.5102 -2.8925 12 1 3.4032 8.5707 -1.8288 13 1 2.9936 8.8047 -4.2071 14 1 1.3103 9.5131 -2.6118 15 6 2.1460 -0.9282 1.0602 16 6 2.0929 -2.0426 0.0018 17 6 2.1448 -0.9317 -1.0604 18 1 -0.3634 0.3312 0.9728 19 1 -0.3634 0.6769 -0.7732 20 1 -0.3634 -1.0081 -0.1996 21 1 2.0184 1.7806 0.9105 22 1 1.6362 1.7414 -2.0119 23 1 0.4020 2.2615 -0.8395 24 1 1.9266 4.0368 -0.0207 25 1 3.1613 3.5173 -1.1929 26 1 1.6015 4.0111 -3.0558 27 1 0.3665 4.5308 -1.8841 28 1 0.3650 7.1985 -4.4236 29 1 1.4945 -1.1069 1.9156 30 1 3.1590 -0.6487 1.3494 31 1 2.9716 -2.6875 0.0024 32 1 1.1573 -2.6019 0.0033 33 1 3.1574 -0.6533 -1.3518 34 1 1.4923 -1.1134 -1.9144 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228852085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:46 Heat of formation + Delta-G solvation = -22.379509 kcal Electronic energy + Delta-G solvation = -12442.899436 eV Core-core repulsion = 10374.579592 eV Total energy + Delta-G solvation = -2068.319844 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.50615 -36.78122 -34.93456 -32.52558 -29.53408 -27.96994 -26.59068 -24.86906 -23.13110 -21.88120 -19.20875 -18.48731 -17.08887 -16.58808 -16.36611 -15.86367 -15.43879 -14.48093 -14.30718 -14.11436 -13.77243 -13.35064 -13.04642 -13.00159 -12.64078 -12.51040 -12.30070 -12.05420 -11.81920 -11.58268 -11.40093 -11.30752 -11.04882 -10.87847 -10.56910 -9.34118 -8.21062 -6.32442 1.39602 1.40127 1.53919 2.40636 3.11977 3.28797 3.61919 3.80138 3.98671 4.00748 4.22852 4.38655 4.52309 4.64108 4.69433 4.79757 4.91102 4.94970 4.98273 5.05728 5.08381 5.13217 5.19973 5.24392 5.45880 5.51516 5.57261 5.73951 5.84666 6.16326 6.28702 6.54768 6.84628 7.37058 8.91257 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.085673 B = 0.005717 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.746874 B = 4896.817237 C = 4993.194402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.068 3.932 3 N -0.675 5.675 4 C 0.072 3.928 5 C -0.092 4.092 6 C 0.025 3.975 7 C -0.543 4.543 8 H 0.059 0.941 9 C -0.002 4.002 10 N -0.935 5.935 11 Si 0.967 3.033 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.276 1.276 15 C -0.120 4.120 16 C -0.128 4.128 17 C -0.131 4.131 18 H 0.061 0.939 19 H 0.047 0.953 20 H 0.077 0.923 21 H 0.341 0.659 22 H 0.054 0.946 23 H 0.027 0.973 24 H 0.050 0.950 25 H 0.050 0.950 26 H -0.011 1.011 27 H -0.010 1.010 28 H 0.264 0.736 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -14.678 8.868 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.023 4.023 3 N -0.305 5.305 4 C -0.057 4.057 5 C -0.130 4.130 6 C -0.012 4.012 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.199 4.199 10 N -0.575 5.575 11 Si 0.792 3.208 12 H -0.186 1.186 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.158 4.158 16 C -0.166 4.166 17 C -0.169 4.169 18 H 0.081 0.919 19 H 0.066 0.934 20 H 0.096 0.904 21 H 0.159 0.841 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.008 0.992 27 H 0.009 0.991 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.750 -14.781 8.346 17.065 hybrid contribution -0.802 1.297 -0.104 1.529 sum 0.948 -13.484 8.242 15.832 Atomic orbital electron populations 1.22154 0.95126 1.02916 1.01936 1.22596 0.92640 0.88006 0.99093 1.60866 1.58320 1.02671 1.08630 1.21807 0.95628 0.92802 0.95440 1.21383 0.99413 0.93573 0.98670 1.18971 0.94608 0.94061 0.93599 1.21729 1.20956 0.97648 1.17771 0.92262 1.26010 0.95484 1.03554 0.94874 1.70109 1.30350 1.35756 1.21312 0.85363 0.78498 0.78670 0.78300 1.18593 1.20278 1.20202 1.23003 1.01446 0.95005 0.96350 1.22703 1.02940 0.95685 0.95268 1.23053 1.00932 0.96166 0.96747 0.91949 0.93418 0.90436 0.84066 0.92752 0.95484 0.93128 0.93146 0.99223 0.99133 0.92734 0.90501 0.89690 0.90305 0.89136 0.90688 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.78 71.98 0.63 -3.10 16 2 C 0.07 1.64 1.20 4.11 0.00 1.65 16 3 N -0.67 -20.04 6.39 -467.29 -2.99 -23.02 16 4 C 0.07 2.63 5.03 86.30 0.43 3.06 16 5 C -0.09 -4.01 5.41 30.59 0.17 -3.84 16 6 C 0.03 1.39 4.97 29.85 0.15 1.54 16 7 C -0.54 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 10 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 11 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 15 C -0.12 -2.30 7.46 31.12 0.23 -2.07 16 16 C -0.13 -2.23 7.72 31.12 0.24 -1.99 16 17 C -0.13 -3.06 7.36 31.18 0.23 -2.84 16 18 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 19 H 0.05 1.29 6.02 -2.39 -0.01 1.27 16 20 H 0.08 1.48 7.34 -2.38 -0.02 1.47 16 21 H 0.34 9.42 8.80 -89.70 -0.79 8.63 16 22 H 0.05 2.08 8.10 -2.38 -0.02 2.06 16 23 H 0.03 0.99 6.24 -2.39 -0.01 0.97 16 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 26 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.34 7.66 -2.39 -0.02 1.33 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -64.31 274.59 2.37 -61.95 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.26 Total: 10.77 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 2.78 Total: -38.99 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -2.70 Total: -80.90 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -64.31 2.37 -61.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228852085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.566 kcal (2) G-P(sol) polarization free energy of solvation -64.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds