Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47235 * 2 1 4 4 N 1.46899 * 112.85037 * 55.53614 * 3 2 1 5 5 C 1.46899 * 110.99884 * 64.29068 * 4 3 2 6 6 H 1.09007 * 109.47251 * 336.72248 * 5 4 3 7 7 C 1.53004 * 109.47108 * 96.72303 * 5 4 3 8 8 C 1.50700 * 109.47249 * 216.72528 * 5 4 3 9 9 H 1.08004 * 119.99831 * 355.16043 * 8 5 4 10 10 C 1.37878 * 119.99947 * 175.16818 * 8 5 4 11 11 N 1.31510 * 120.00133 * 164.22809 * 10 8 5 12 12 Si 1.86800 * 119.99859 * 344.22233 * 10 8 5 13 13 H 1.48500 * 109.47387 * 270.00228 * 12 10 8 14 14 H 1.48497 * 109.47420 * 30.00705 * 12 10 8 15 15 H 1.48503 * 109.46873 * 150.00559 * 12 10 8 16 16 C 1.53782 * 113.61636 * 186.74025 * 3 2 1 17 17 C 1.53953 * 87.02131 * 89.22431 * 16 3 2 18 18 C 1.53781 * 113.61096 * 284.34447 * 3 2 1 19 19 H 1.08999 * 109.47062 * 184.64019 * 1 2 3 20 20 H 1.09006 * 109.47632 * 304.64373 * 1 2 3 21 21 H 1.09005 * 109.46899 * 64.64179 * 1 2 3 22 22 H 1.08996 * 109.47546 * 239.99493 * 2 1 3 23 23 H 1.08999 * 109.46909 * 119.99294 * 2 1 3 24 24 H 1.00896 * 111.00060 * 188.24095 * 4 3 2 25 25 H 1.08998 * 109.47261 * 52.64759 * 7 5 4 26 26 H 1.09005 * 109.46956 * 172.65032 * 7 5 4 27 27 H 1.09003 * 109.47018 * 292.64633 * 7 5 4 28 28 H 0.97002 * 119.99876 * 354.88770 * 11 10 8 29 29 H 1.08995 * 113.61139 * 203.74437 * 16 3 2 30 30 H 1.09001 * 113.60851 * 334.64578 * 16 3 2 31 31 H 1.08997 * 113.54045 * 270.81560 * 17 16 3 32 32 H 1.09000 * 113.74251 * 139.94113 * 17 16 3 33 33 H 1.09007 * 113.61365 * 25.34848 * 18 3 2 34 34 H 1.09000 * 113.61750 * 156.16078 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5079 2.2357 1.1161 5 6 1.9718 1.7070 2.4058 6 1 2.2420 0.6571 2.2921 7 6 3.1938 2.5006 2.8725 8 6 0.8703 1.8345 3.4264 9 1 -0.0508 2.3354 3.1671 10 6 1.0385 1.3117 4.6911 11 7 0.2360 1.6785 5.6663 12 14 2.4061 0.0824 5.0193 13 1 1.9004 -1.2944 4.7873 14 1 3.5444 0.3523 4.1047 15 1 2.8608 0.2120 6.4271 16 6 3.5646 1.5569 -0.1654 17 6 3.3166 1.5904 -1.6844 18 6 1.9162 2.1396 -1.3651 19 1 -0.3633 -1.0243 0.0831 20 1 -0.3634 0.5842 0.8455 21 1 -0.3633 0.4401 -0.9287 22 1 1.8933 -0.5139 -0.8899 23 1 1.8932 -0.5137 0.8900 24 1 1.7515 3.2097 1.0160 25 1 2.9617 3.5655 2.8609 26 1 3.4588 2.1974 3.8855 27 1 4.0318 2.3041 2.2036 28 1 -0.4261 2.3710 5.5150 29 1 3.9782 2.4846 0.2300 30 1 4.1076 0.6733 0.1700 31 1 3.3036 0.6027 -2.1453 32 1 3.9520 2.2978 -2.2173 33 1 1.1303 1.7257 -1.9971 34 1 1.8768 3.2268 -1.2983 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229489213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = 9.881059 kcal Electronic energy + Delta-G solvation = -13443.917641 eV Core-core repulsion = 11376.996720 eV Total energy + Delta-G solvation = -2066.920921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.51023 -34.77585 -32.07847 -31.51756 -28.35237 -25.51433 -24.61817 -23.88453 -21.92666 -19.65912 -17.95246 -17.35156 -15.75950 -15.06899 -14.18041 -13.64192 -13.49577 -13.00690 -12.42469 -12.35044 -12.08757 -11.86216 -11.71166 -11.26452 -11.14036 -10.81338 -10.78091 -10.40936 -10.31395 -9.98244 -9.93927 -9.61278 -9.43554 -8.80342 -8.19274 -7.28071 -6.30284 -3.91252 3.44167 3.45803 3.60572 4.56881 4.84890 4.95178 5.01833 5.15036 5.26680 5.36369 5.76172 5.82174 5.94695 5.97147 6.06830 6.12965 6.18565 6.28100 6.34001 6.45488 6.47336 6.52786 6.65389 6.75250 6.81409 6.98518 7.14104 7.25180 7.96309 8.41660 8.45708 8.56589 9.13647 9.75355 11.05849 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042605 B = 0.012060 C = 0.011399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.046820 B = 2321.085207 C = 2455.736676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C 0.103 3.897 4 N -0.659 5.659 5 C 0.190 3.810 6 H 0.027 0.973 7 C -0.174 4.174 8 C -0.574 4.574 9 H 0.062 0.938 10 C 0.026 3.974 11 N -0.915 5.915 12 Si 1.039 2.961 13 H -0.288 1.288 14 H -0.274 1.274 15 H -0.288 1.288 16 C -0.174 4.174 17 C -0.141 4.141 18 C -0.132 4.132 19 H 0.039 0.961 20 H 0.082 0.918 21 H 0.041 0.959 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.326 0.674 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.267 0.733 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.883 -1.387 -12.279 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C 0.010 3.990 4 N -0.287 5.287 5 C 0.081 3.919 6 H 0.044 0.956 7 C -0.233 4.233 8 C -0.613 4.613 9 H 0.080 0.920 10 C -0.178 4.178 11 N -0.550 5.550 12 Si 0.867 3.133 13 H -0.214 1.214 14 H -0.200 1.200 15 H -0.214 1.214 16 C -0.214 4.214 17 C -0.179 4.179 18 C -0.170 4.170 19 H 0.058 0.942 20 H 0.101 0.899 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.144 0.856 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.903 -2.704 -11.060 12.825 hybrid contribution 0.401 1.339 -1.123 1.793 sum 6.304 -1.365 -12.183 13.785 Atomic orbital electron populations 1.21605 0.94993 1.00542 1.02681 1.21206 0.97096 0.93659 1.00759 1.22227 0.90655 0.94672 0.91452 1.60529 1.62253 1.04461 1.01456 1.19517 0.92361 0.93475 0.86518 0.95559 1.22903 0.98962 1.00730 1.00701 1.22045 1.02150 1.40686 0.96402 0.91995 1.25629 1.00889 0.99063 0.92204 1.70789 1.21168 1.29957 1.33051 0.84191 0.76572 0.76618 0.75886 1.21447 1.20007 1.21413 1.23839 0.99884 1.01780 0.95915 1.22776 0.97585 1.00788 0.96708 1.23072 0.96570 1.00084 0.97251 0.94200 0.89865 0.94010 0.92888 0.91750 0.85642 0.93920 0.92950 0.95782 0.92294 0.90394 0.92073 0.90595 0.92160 0.91588 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.71 37.15 0.36 -2.07 16 2 C -0.09 -1.52 5.03 -26.73 -0.13 -1.65 16 3 C 0.10 1.74 0.62 -130.79 -0.08 1.66 16 4 N -0.66 -13.45 5.41 -93.43 -0.51 -13.96 16 5 C 0.19 4.45 1.78 -68.86 -0.12 4.33 16 6 H 0.03 0.64 4.66 -51.93 -0.24 0.40 16 7 C -0.17 -3.80 8.21 37.16 0.30 -3.50 16 8 C -0.57 -16.16 9.13 -34.44 -0.31 -16.48 16 9 H 0.06 1.92 8.06 -52.48 -0.42 1.50 16 10 C 0.03 0.75 5.31 -17.82 -0.09 0.66 16 11 N -0.91 -28.47 13.70 55.43 0.76 -27.72 16 12 Si 1.04 25.46 26.16 -169.99 -4.45 21.01 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.18 5.55 56.52 0.31 -5.86 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 C -0.17 -2.70 6.01 -25.83 -0.16 -2.85 16 17 C -0.14 -1.82 7.74 -25.83 -0.20 -2.02 16 18 C -0.13 -1.88 7.28 -25.92 -0.19 -2.07 16 19 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 20 H 0.08 1.73 7.52 -51.93 -0.39 1.34 16 21 H 0.04 0.65 7.55 -51.93 -0.39 0.25 16 22 H 0.05 0.77 7.31 -51.93 -0.38 0.39 16 23 H 0.06 1.20 6.62 -51.93 -0.34 0.86 16 24 H 0.33 6.37 8.02 -39.29 -0.32 6.06 16 25 H 0.04 0.90 7.97 -51.93 -0.41 0.49 16 26 H 0.05 1.20 5.05 -51.93 -0.26 0.94 16 27 H 0.02 0.46 6.07 -51.93 -0.31 0.14 16 28 H 0.27 8.32 8.73 -40.82 -0.36 7.96 16 29 H 0.08 1.23 7.00 -51.93 -0.36 0.86 16 30 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.08 0.91 7.61 -51.93 -0.40 0.52 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.90 7.50 -51.93 -0.39 0.51 16 34 H 0.08 1.07 8.02 -51.93 -0.42 0.65 16 LS Contribution 257.91 15.07 3.89 3.89 Total: -1.00 -29.42 257.91 -6.48 -35.90 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.55 Total: 4.87 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -0.63 Total: -23.99 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.25 Total: -41.68 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -4.45 Total: 21.01 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.42 -6.48 -35.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229489213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.779 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds