Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47235 * 2 1 4 4 N 1.46899 * 112.85037 * 55.53614 * 3 2 1 5 5 C 1.46899 * 110.99884 * 64.29068 * 4 3 2 6 6 H 1.09007 * 109.47251 * 336.72248 * 5 4 3 7 7 C 1.53004 * 109.47108 * 96.72303 * 5 4 3 8 8 C 1.50700 * 109.47249 * 216.72528 * 5 4 3 9 9 H 1.08004 * 119.99831 * 355.16043 * 8 5 4 10 10 C 1.37878 * 119.99947 * 175.16818 * 8 5 4 11 11 N 1.31510 * 120.00133 * 164.22809 * 10 8 5 12 12 Si 1.86800 * 119.99859 * 344.22233 * 10 8 5 13 13 H 1.48500 * 109.47387 * 270.00228 * 12 10 8 14 14 H 1.48497 * 109.47420 * 30.00705 * 12 10 8 15 15 H 1.48503 * 109.46873 * 150.00559 * 12 10 8 16 16 C 1.53782 * 113.61636 * 186.74025 * 3 2 1 17 17 C 1.53953 * 87.02131 * 89.22431 * 16 3 2 18 18 C 1.53781 * 113.61096 * 284.34447 * 3 2 1 19 19 H 1.08999 * 109.47062 * 184.64019 * 1 2 3 20 20 H 1.09006 * 109.47632 * 304.64373 * 1 2 3 21 21 H 1.09005 * 109.46899 * 64.64179 * 1 2 3 22 22 H 1.08996 * 109.47546 * 239.99493 * 2 1 3 23 23 H 1.08999 * 109.46909 * 119.99294 * 2 1 3 24 24 H 1.00896 * 111.00060 * 188.24095 * 4 3 2 25 25 H 1.08998 * 109.47261 * 52.64759 * 7 5 4 26 26 H 1.09005 * 109.46956 * 172.65032 * 7 5 4 27 27 H 1.09003 * 109.47018 * 292.64633 * 7 5 4 28 28 H 0.97002 * 119.99876 * 354.88770 * 11 10 8 29 29 H 1.08995 * 113.61139 * 203.74437 * 16 3 2 30 30 H 1.09001 * 113.60851 * 334.64578 * 16 3 2 31 31 H 1.08997 * 113.54045 * 270.81560 * 17 16 3 32 32 H 1.09000 * 113.74251 * 139.94113 * 17 16 3 33 33 H 1.09007 * 113.61365 * 25.34848 * 18 3 2 34 34 H 1.09000 * 113.61750 * 156.16078 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5079 2.2357 1.1161 5 6 1.9718 1.7070 2.4058 6 1 2.2420 0.6571 2.2921 7 6 3.1938 2.5006 2.8725 8 6 0.8703 1.8345 3.4264 9 1 -0.0508 2.3354 3.1671 10 6 1.0385 1.3117 4.6911 11 7 0.2360 1.6785 5.6663 12 14 2.4061 0.0824 5.0193 13 1 1.9004 -1.2944 4.7873 14 1 3.5444 0.3523 4.1047 15 1 2.8608 0.2120 6.4271 16 6 3.5646 1.5569 -0.1654 17 6 3.3166 1.5904 -1.6844 18 6 1.9162 2.1396 -1.3651 19 1 -0.3633 -1.0243 0.0831 20 1 -0.3634 0.5842 0.8455 21 1 -0.3633 0.4401 -0.9287 22 1 1.8933 -0.5139 -0.8899 23 1 1.8932 -0.5137 0.8900 24 1 1.7515 3.2097 1.0160 25 1 2.9617 3.5655 2.8609 26 1 3.4588 2.1974 3.8855 27 1 4.0318 2.3041 2.2036 28 1 -0.4261 2.3710 5.5150 29 1 3.9782 2.4846 0.2300 30 1 4.1076 0.6733 0.1700 31 1 3.3036 0.6027 -2.1453 32 1 3.9520 2.2978 -2.2173 33 1 1.1303 1.7257 -1.9971 34 1 1.8768 3.2268 -1.2983 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229489213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -9.859539 kcal Electronic energy + Delta-G solvation = -13444.773657 eV Core-core repulsion = 11376.996720 eV Total energy + Delta-G solvation = -2067.776937 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.80734 -36.56432 -34.02138 -33.00736 -30.04782 -26.92716 -26.42839 -25.22896 -23.29998 -21.44694 -19.62652 -19.13897 -17.17239 -16.37212 -15.97216 -15.31005 -14.99027 -14.61368 -14.04834 -13.84282 -13.79917 -13.42640 -13.14754 -13.00757 -12.49060 -12.36063 -12.19609 -12.04604 -11.76511 -11.61016 -11.36544 -11.22289 -10.91528 -10.82172 -10.40762 -8.95778 -8.54227 -6.23931 1.45742 1.51076 1.68290 2.52260 3.12931 3.49807 3.76565 3.89034 3.90906 4.00742 4.50171 4.54236 4.58554 4.66207 4.71874 4.84227 4.85476 4.90319 4.96994 5.08296 5.09953 5.11387 5.19280 5.31051 5.43610 5.51274 5.58679 5.66477 5.99900 6.14997 6.54689 6.84782 6.90060 7.53299 8.72120 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042605 B = 0.012060 C = 0.011399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.046820 B = 2321.085207 C = 2455.736676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C 0.085 3.915 4 N -0.674 5.674 5 C 0.197 3.803 6 H 0.027 0.973 7 C -0.169 4.169 8 C -0.572 4.572 9 H 0.015 0.985 10 C -0.028 4.028 11 N -0.949 5.949 12 Si 1.080 2.920 13 H -0.277 1.277 14 H -0.240 1.240 15 H -0.289 1.289 16 C -0.175 4.175 17 C -0.122 4.122 18 C -0.127 4.127 19 H 0.050 0.950 20 H 0.037 0.963 21 H 0.059 0.941 22 H 0.085 0.915 23 H 0.042 0.958 24 H 0.329 0.671 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.250 0.750 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.132 -2.271 -14.609 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.006 4.006 4 N -0.302 5.302 5 C 0.088 3.912 6 H 0.044 0.956 7 C -0.228 4.228 8 C -0.610 4.610 9 H 0.034 0.966 10 C -0.225 4.225 11 N -0.587 5.587 12 Si 0.902 3.098 13 H -0.203 1.203 14 H -0.163 1.163 15 H -0.215 1.215 16 C -0.215 4.215 17 C -0.160 4.160 18 C -0.164 4.164 19 H 0.069 0.931 20 H 0.056 0.944 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.061 0.939 24 H 0.147 0.853 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.154 -3.575 -13.433 16.115 hybrid contribution -0.412 1.668 -0.474 1.783 sum 7.741 -1.906 -13.906 16.029 Atomic orbital electron populations 1.21522 0.95710 1.00540 1.01558 1.21255 0.96457 0.93879 1.01253 1.22491 0.92227 0.94512 0.91401 1.60340 1.63388 1.05075 1.01430 1.19246 0.91134 0.93928 0.86932 0.95555 1.22777 0.99079 1.00302 1.00637 1.22268 1.01892 1.39014 0.97857 0.96611 1.27067 1.02601 1.00501 0.92283 1.70925 1.22506 1.30963 1.34293 0.83688 0.74998 0.74700 0.76435 1.20343 1.16313 1.21520 1.23800 0.97971 1.01599 0.98141 1.22720 0.96310 1.02022 0.94943 1.23057 0.98075 1.00087 0.95227 0.93093 0.94380 0.92228 0.89627 0.93879 0.85297 0.94021 0.94070 0.92634 0.94147 0.90701 0.92108 0.89048 0.90268 0.90782 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.71 71.98 0.70 -3.84 16 2 C -0.09 -2.86 5.03 30.59 0.15 -2.71 16 3 C 0.09 2.70 0.62 4.06 0.00 2.70 16 4 N -0.67 -27.07 5.41 -449.49 -2.43 -29.50 16 5 C 0.20 9.12 1.78 44.17 0.08 9.20 16 6 H 0.03 1.24 4.66 -2.38 -0.01 1.23 16 7 C -0.17 -7.08 8.21 71.98 0.59 -6.48 16 8 C -0.57 -33.14 9.13 25.60 0.23 -32.91 16 9 H 0.02 1.02 8.06 -2.91 -0.02 1.00 16 10 C -0.03 -1.67 5.31 84.66 0.45 -1.22 16 11 N -0.95 -61.33 13.70 21.45 0.29 -61.03 16 12 Si 1.08 51.01 26.16 68.60 1.79 52.81 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.24 -9.89 5.55 99.48 0.55 -9.33 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 16 C -0.18 -4.77 6.01 31.18 0.19 -4.59 16 17 C -0.12 -2.59 7.74 31.18 0.24 -2.34 16 18 C -0.13 -3.18 7.28 31.12 0.23 -2.95 16 19 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 20 H 0.04 1.60 7.52 -2.38 -0.02 1.58 16 21 H 0.06 1.74 7.55 -2.38 -0.02 1.72 16 22 H 0.09 2.14 7.31 -2.39 -0.02 2.12 16 23 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 24 H 0.33 12.63 8.02 -89.70 -0.72 11.91 16 25 H 0.04 1.72 7.97 -2.39 -0.02 1.70 16 26 H 0.04 1.80 5.05 -2.38 -0.01 1.78 16 27 H 0.05 1.96 6.07 -2.39 -0.01 1.95 16 28 H 0.25 16.45 8.73 -92.71 -0.81 15.64 16 29 H 0.07 2.08 7.00 -2.39 -0.02 2.07 16 30 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 31 H 0.09 1.69 7.61 -2.39 -0.02 1.68 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.75 7.50 -2.38 -0.02 1.73 16 34 H 0.08 1.95 8.02 -2.39 -0.02 1.93 16 Total: -1.00 -65.59 257.91 2.68 -62.91 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.16 Total: 19.97 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 2.86 Total: -45.15 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -2.14 Total: -90.54 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 1.79 Total: 52.81 kcal Total: -65.59 2.68 -62.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229489213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.054 kcal (2) G-P(sol) polarization free energy of solvation -65.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds