Wall clock time and date at job start Mon Mar 30 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47503 * 2 1 4 4 C 1.52991 * 109.47488 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.56556 * 29.30679 * 4 3 2 6 6 C 1.52997 * 117.49996 * 243.62350 * 4 3 2 7 7 C 1.52991 * 60.00066 * 252.50523 * 6 4 3 8 8 H 1.08994 * 117.50238 * 252.48090 * 7 6 4 9 9 N 1.46911 * 117.49823 * 107.48384 * 7 6 4 10 10 C 1.46902 * 110.99614 * 136.39336 * 9 7 6 11 11 H 1.08996 * 109.47149 * 324.99463 * 10 9 7 12 12 C 1.52997 * 109.47094 * 85.00357 * 10 9 7 13 13 C 1.50706 * 109.46577 * 205.00147 * 10 9 7 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 H 1.09000 * 109.46836 * 299.99937 * 1 2 3 22 22 H 1.08997 * 109.47108 * 59.99689 * 1 2 3 23 23 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46836 * 240.00063 * 2 1 3 25 25 H 1.08997 * 109.47108 * 120.00311 * 2 1 3 26 26 H 1.08996 * 109.46961 * 59.99678 * 3 2 1 27 27 H 1.09005 * 109.46899 * 300.00333 * 3 2 1 28 28 H 1.09005 * 117.50187 * 145.01521 * 6 4 3 29 29 H 1.09004 * 117.49914 * 359.97438 * 6 4 3 30 30 H 1.00897 * 110.99488 * 12.43953 * 9 7 6 31 31 H 1.09002 * 109.47153 * 299.99508 * 12 10 9 32 32 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 33 33 H 1.09004 * 109.47261 * 59.99681 * 12 10 9 34 34 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0402 0.5851 -0.4823 6 6 4.2770 2.0452 1.2150 7 6 4.2765 2.7944 -0.1190 8 1 5.2114 2.8269 -0.6783 9 7 3.4338 3.9932 -0.2234 10 6 4.1496 5.0825 -0.9009 11 1 5.2057 5.0446 -0.6337 12 6 4.0006 4.9260 -2.4156 13 6 3.5705 6.4064 -0.4732 14 1 2.7522 6.4357 0.2310 15 6 4.0846 7.5803 -0.9820 16 7 5.0800 7.5445 -1.8407 17 14 3.3672 9.2214 -0.4513 18 1 3.5129 9.3732 1.0186 19 1 4.0900 10.3225 -1.1372 20 1 1.9281 9.2731 -0.8141 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9564 -0.8900 28 1 5.2122 1.5844 1.5331 29 1 3.6521 2.4422 2.0150 30 1 3.1068 4.2855 0.6853 31 1 4.4195 3.9684 -2.7249 32 1 4.5315 5.7345 -2.9182 33 1 2.9445 4.9639 -2.6826 34 1 5.4414 8.3704 -2.1988 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231694529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:53 Heat of formation + Delta-G solvation = -15.282454 kcal Electronic energy + Delta-G solvation = -12570.636262 eV Core-core repulsion = 10502.624169 eV Total energy + Delta-G solvation = -2068.012093 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.39432 -36.60734 -34.81169 -33.32839 -29.46508 -27.91191 -27.26120 -22.98544 -22.38503 -21.98889 -20.54266 -18.47489 -17.05729 -16.31076 -15.82466 -15.74696 -15.23968 -14.43240 -14.22473 -13.77378 -13.38951 -13.21326 -12.86688 -12.81270 -12.63672 -12.52485 -12.24318 -12.05069 -12.01572 -11.76332 -11.55440 -11.23776 -10.93566 -10.61657 -10.49104 -8.81866 -8.13918 -6.28630 1.42215 1.44373 1.51995 2.41025 2.99434 3.14383 3.55652 3.84147 4.08301 4.28442 4.32384 4.46855 4.55292 4.71259 4.81453 4.87518 4.99081 5.02455 5.06504 5.10695 5.16046 5.21602 5.26218 5.45741 5.49063 5.51559 5.65982 5.68881 5.85779 6.20494 6.48340 6.77982 6.99266 7.41912 8.91698 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.047050 B = 0.007395 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.974156 B = 3785.273934 C = 3965.940989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.072 4.072 4 C -0.134 4.134 5 H 0.111 0.889 6 C -0.193 4.193 7 C 0.005 3.995 8 H 0.084 0.916 9 N -0.649 5.649 10 C 0.218 3.782 11 H -0.031 1.031 12 C -0.111 4.111 13 C -0.541 4.541 14 H 0.059 0.941 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.964 3.036 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.271 1.271 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.332 0.668 31 H 0.019 0.981 32 H 0.057 0.943 33 H 0.026 0.974 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 -11.653 4.348 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.110 4.110 4 C -0.153 4.153 5 H 0.129 0.871 6 C -0.232 4.232 7 C -0.106 4.106 8 H 0.102 0.898 9 N -0.278 5.278 10 C 0.110 3.890 11 H -0.013 1.013 12 C -0.169 4.169 13 C -0.579 4.579 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.789 3.211 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.197 1.197 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.150 0.850 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.931 -11.717 3.656 13.228 hybrid contribution 0.628 1.342 0.668 1.625 sum -4.303 -10.375 4.324 12.036 Atomic orbital electron populations 1.21766 0.95564 1.01946 1.01600 1.21501 0.96043 0.95785 1.02073 1.20921 0.91938 0.96856 1.01296 1.22659 0.95713 0.95862 1.01112 0.87108 1.23558 1.02984 1.05047 0.91581 1.22578 0.96887 0.90645 1.00533 0.89828 1.60353 1.38204 1.04941 1.24330 1.18925 0.90220 0.88014 0.91877 1.01305 1.21528 0.98920 0.98160 0.98321 1.21561 1.18136 0.91693 1.26492 0.92275 1.25748 0.95196 1.02781 0.94877 1.70020 1.26135 1.28459 1.31111 0.85520 0.78511 0.78524 0.78510 1.19521 1.20839 1.19660 0.92923 0.93346 0.91623 0.91947 0.91501 0.92889 0.93107 0.87925 0.88836 0.84979 0.96171 0.92446 0.95473 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.12 -2.53 5.89 30.59 0.18 -2.35 16 3 C -0.07 -2.03 4.95 30.59 0.15 -1.88 16 4 C -0.13 -3.92 5.74 -10.80 -0.06 -3.98 16 5 H 0.11 2.87 8.08 -2.38 -0.02 2.85 16 6 C -0.19 -5.63 9.88 30.59 0.30 -5.33 16 7 C 0.00 0.18 6.00 44.91 0.27 0.45 16 8 H 0.08 3.32 7.77 -2.39 -0.02 3.30 16 9 N -0.65 -28.34 5.95 -473.31 -2.82 -31.16 16 10 C 0.22 11.45 2.50 44.17 0.11 11.56 16 11 H -0.03 -1.78 7.73 -2.39 -0.02 -1.79 16 12 C -0.11 -5.74 9.19 71.98 0.66 -5.07 16 13 C -0.54 -30.23 8.59 25.60 0.22 -30.01 16 14 H 0.06 3.22 7.62 -2.91 -0.02 3.20 16 15 C 0.01 0.74 5.30 84.66 0.45 1.19 16 16 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 17 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.53 7.88 -2.39 -0.02 1.51 16 27 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 29 H 0.09 2.68 7.98 -2.38 -0.02 2.66 16 30 H 0.33 14.20 8.01 -89.70 -0.72 13.49 16 31 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 32 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 33 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -59.18 278.72 2.77 -56.41 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.33 Total: 20.00 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 3.00 Total: -37.71 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.57 Total: -84.51 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -59.18 2.77 -56.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231694529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.127 kcal (2) G-P(sol) polarization free energy of solvation -59.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds