Wall clock time and date at job start Mon Mar 30 2020 02:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 C 1.52998 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.08990 * 115.56470 * 29.29581 * 4 3 2 6 6 C 1.53006 * 117.49629 * 243.60176 * 4 3 2 7 7 C 1.52997 * 59.99924 * 252.51523 * 6 4 3 8 8 H 1.09002 * 117.49884 * 107.49654 * 7 6 4 9 9 N 1.46908 * 117.49626 * 252.50902 * 7 6 4 10 10 C 1.46901 * 110.99879 * 223.62269 * 9 7 6 11 11 H 1.08999 * 109.47281 * 325.00196 * 10 9 7 12 12 C 1.52996 * 109.46829 * 85.00542 * 10 9 7 13 13 C 1.50699 * 109.46952 * 205.00165 * 10 9 7 14 14 H 1.08004 * 120.00245 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99905 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00256 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99739 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46912 * 89.99808 * 17 15 13 19 19 H 1.48507 * 109.46721 * 209.99343 * 17 15 13 20 20 H 1.48492 * 109.47474 * 329.99440 * 17 15 13 21 21 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47183 * 300.00838 * 1 2 3 23 23 H 1.09007 * 109.46678 * 60.00727 * 1 2 3 24 24 H 1.08995 * 109.47183 * 239.99162 * 2 1 3 25 25 H 1.09007 * 109.46678 * 119.99273 * 2 1 3 26 26 H 1.09004 * 109.47179 * 59.99266 * 3 2 1 27 27 H 1.09007 * 109.46703 * 299.99258 * 3 2 1 28 28 H 1.08999 * 117.49661 * 0.02562 * 6 4 3 29 29 H 1.08999 * 117.49552 * 144.99844 * 6 4 3 30 30 H 1.00901 * 110.99850 * 347.58041 * 9 7 6 31 31 H 1.09004 * 109.47365 * 179.97438 * 12 10 9 32 32 H 1.09009 * 109.47329 * 299.99302 * 12 10 9 33 33 H 1.08999 * 109.47472 * 59.99770 * 12 10 9 34 34 H 0.96997 * 120.00320 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0405 0.5849 -0.4801 6 6 4.2760 2.0460 1.2166 7 6 4.2765 2.7944 -0.1179 8 1 3.6513 3.6839 -0.1964 9 7 5.5371 2.8372 -0.8710 10 6 5.7862 4.1831 -1.4045 11 1 4.8390 4.6439 -1.6847 12 6 6.4720 5.0364 -0.3357 13 6 6.6758 4.0862 -2.6169 14 1 7.0213 3.1212 -2.9575 15 6 7.0487 5.2293 -3.2915 16 7 6.6276 6.4043 -2.8772 17 14 8.1521 5.1091 -4.7941 18 1 7.3154 4.9617 -6.0121 19 1 8.9740 6.3411 -4.9043 20 1 9.0438 3.9294 -4.6604 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6768 1.9563 -0.8901 28 1 3.6503 2.4427 2.0161 29 1 5.2107 1.5851 1.5359 30 1 6.3094 2.5254 -0.3014 31 1 6.6572 6.0350 -0.7316 32 1 5.8285 5.1066 0.5414 33 1 7.4192 4.5756 -0.0554 34 1 6.8896 7.2085 -3.3520 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231694535.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:54 Heat of formation + Delta-G solvation = 0.751503 kcal Electronic energy + Delta-G solvation = -12401.956068 eV Core-core repulsion = 10334.639260 eV Total energy + Delta-G solvation = -2067.316808 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.95986 -35.10605 -33.52269 -31.51156 -27.84520 -26.43898 -25.07977 -21.84342 -20.91530 -20.13828 -19.97477 -16.25991 -15.33522 -14.92364 -14.62266 -14.21384 -13.29443 -12.94895 -12.67153 -12.53305 -12.13259 -11.77163 -11.46809 -11.18233 -10.93216 -10.92286 -10.79380 -10.66925 -10.57839 -10.14354 -10.02259 -9.84397 -9.42708 -8.84946 -8.34221 -7.09500 -5.96843 -4.00076 3.34566 3.40382 3.44788 4.31509 4.45110 4.78595 5.10998 5.19504 5.31436 5.34751 5.42842 5.51685 5.70768 5.83568 5.88496 5.98016 6.03529 6.13030 6.18769 6.35921 6.40894 6.45177 6.72392 6.74674 6.89162 7.12238 7.39623 7.76183 7.91535 8.30071 8.54607 8.63798 9.07007 9.65146 11.10343 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.050448 B = 0.006717 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.888612 B = 4167.739865 C = 4423.227749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.153 4.153 5 H 0.102 0.898 6 C -0.214 4.214 7 C 0.047 3.953 8 H 0.099 0.901 9 N -0.653 5.653 10 C 0.212 3.788 11 H 0.035 0.965 12 C -0.168 4.168 13 C -0.496 4.496 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.328 0.672 31 H 0.088 0.912 32 H 0.006 0.994 33 H 0.027 0.973 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 -8.129 6.411 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.123 4.123 4 C -0.173 4.173 5 H 0.120 0.880 6 C -0.253 4.253 7 C -0.065 4.065 8 H 0.117 0.883 9 N -0.281 5.281 10 C 0.105 3.895 11 H 0.053 0.947 12 C -0.227 4.227 13 C -0.535 4.535 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.107 0.893 32 H 0.025 0.975 33 H 0.046 0.954 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.678 -8.149 5.747 12.585 hybrid contribution 0.874 0.505 0.080 1.012 sum -6.804 -7.643 5.826 11.775 Atomic orbital electron populations 1.21789 0.96356 1.01174 1.01681 1.21500 0.95175 0.97233 1.01883 1.21153 0.93251 0.96368 1.01578 1.22572 0.93759 0.99262 1.01677 0.88023 1.23551 1.02538 1.06818 0.92400 1.22589 0.95951 0.94171 0.93754 0.88299 1.60497 1.01550 1.29515 1.36557 1.19259 0.96145 0.81882 0.92260 0.94743 1.22453 0.98081 1.05270 0.96934 1.21158 1.29035 0.93013 1.10266 0.91971 1.24947 0.96544 0.95319 0.97718 1.69883 1.45960 0.97634 1.40294 0.86495 0.80502 0.77301 0.83061 1.20749 1.21411 1.19940 0.93108 0.93001 0.92756 0.91997 0.92267 0.92440 0.91731 0.89771 0.89458 0.85368 0.89305 0.97478 0.95396 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.37 5.89 -26.73 -0.16 -1.53 16 3 C -0.09 -1.15 5.50 -26.73 -0.15 -1.29 16 4 C -0.15 -2.40 5.66 -90.62 -0.51 -2.91 16 5 H 0.10 1.66 8.07 -51.93 -0.42 1.24 16 6 C -0.21 -3.29 9.88 -26.73 -0.26 -3.55 16 7 C 0.05 0.88 5.81 -67.71 -0.39 0.49 16 8 H 0.10 1.93 7.60 -51.93 -0.39 1.53 16 9 N -0.65 -14.34 6.51 -100.95 -0.66 -14.99 16 10 C 0.21 5.44 2.53 -68.87 -0.17 5.26 16 11 H 0.03 0.97 7.57 -51.93 -0.39 0.58 16 12 C -0.17 -4.11 8.94 37.16 0.33 -3.77 16 13 C -0.50 -13.96 8.84 -34.44 -0.30 -14.26 16 14 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 15 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 16 N -0.90 -25.94 11.32 55.43 0.63 -25.31 16 17 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.72 7.87 -51.93 -0.41 0.32 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 29 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 30 H 0.33 6.84 8.26 -39.29 -0.32 6.52 16 31 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 32 H 0.01 0.14 8.07 -51.92 -0.42 -0.28 16 33 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 279.70 15.07 4.22 4.22 Total: -1.00 -28.25 279.70 -8.20 -36.45 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.02 Total: 4.21 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -1.35 Total: -21.25 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.03 Total: -40.31 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.25 -8.20 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231694535.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.200 kcal (2) G-P(sol) polarization free energy of solvation -28.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds