Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46786 * 2 1 4 4 C 1.53005 * 112.85465 * 305.42048 * 3 2 1 5 5 N 1.46902 * 109.46981 * 292.49704 * 4 3 2 6 6 C 1.46904 * 110.99762 * 174.43948 * 5 4 3 7 7 C 1.50698 * 109.47094 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99668 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99972 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00003 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99807 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47171 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47099 * 120.00151 * 11 9 7 14 14 H 1.48500 * 109.46903 * 239.99754 * 11 9 7 15 15 C 1.53785 * 113.61458 * 174.22731 * 3 2 1 16 16 C 1.53783 * 87.08061 * 219.93403 * 15 3 2 17 17 C 1.53780 * 87.17331 * 25.38839 * 16 15 3 18 18 H 1.09003 * 109.47349 * 305.95619 * 1 2 3 19 19 H 1.09000 * 109.47366 * 65.95596 * 1 2 3 20 20 H 1.09002 * 109.46690 * 185.95166 * 1 2 3 21 21 H 1.08996 * 109.46961 * 240.00317 * 2 1 3 22 22 H 1.08998 * 109.46987 * 119.99862 * 2 1 3 23 23 H 1.09009 * 109.46757 * 52.49418 * 4 3 2 24 24 H 1.08996 * 109.47307 * 172.48936 * 4 3 2 25 25 H 1.00898 * 110.99724 * 298.39244 * 5 4 3 26 26 H 1.08998 * 109.47522 * 300.00092 * 6 5 4 27 27 H 1.09001 * 109.46979 * 59.99995 * 6 5 4 28 28 H 0.97001 * 119.99621 * 180.02562 * 10 9 7 29 29 H 1.08994 * 113.61478 * 105.38997 * 15 3 2 30 30 H 1.08999 * 113.68694 * 334.49477 * 15 3 2 31 31 H 1.09000 * 113.61326 * 139.97404 * 16 15 3 32 32 H 1.09000 * 113.61468 * 270.79735 * 16 15 3 33 33 H 1.09003 * 113.61560 * 89.16053 * 17 16 15 34 34 H 1.09002 * 113.61647 * 220.05558 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4675 2.2751 -1.1490 5 7 1.9923 1.7734 -2.4260 6 6 1.3635 2.4626 -3.5608 7 6 1.9260 1.9231 -4.8505 8 1 2.6753 1.1456 -4.8294 9 6 1.4841 2.4220 -6.0574 10 7 0.5720 3.3691 -6.0831 11 14 2.1809 1.7527 -7.6562 12 1 3.1847 0.7003 -7.3565 13 1 1.0829 1.1714 -8.4697 14 1 2.8283 2.8539 -8.4134 15 6 3.5670 1.5561 0.1417 16 6 3.3128 2.7571 1.0679 17 6 1.9393 2.1356 1.3710 18 1 -0.3634 0.6034 0.8319 19 1 -0.3634 0.4187 -0.9385 20 1 -0.3633 -1.0222 0.1066 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 0.3802 2.1976 -1.1473 24 1 1.7575 3.3181 -1.0215 25 1 2.9970 1.8589 -2.4627 26 1 0.2866 2.2959 -3.5357 27 1 1.5673 3.5314 -3.4949 28 1 0.2608 3.7198 -6.9323 29 1 4.0732 1.8202 -0.7867 30 1 4.0245 0.7049 0.6460 31 1 3.9770 2.7907 1.9316 32 1 3.2545 3.7098 0.5415 33 1 1.9496 1.4427 2.2124 34 1 1.1333 2.8668 1.4336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232947238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -1.646067 kcal Electronic energy + Delta-G solvation = -12819.916441 eV Core-core repulsion = 10752.495666 eV Total energy + Delta-G solvation = -2067.420774 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.51414 -34.62109 -32.51760 -31.93566 -27.60506 -25.56652 -25.25503 -23.57132 -21.37650 -21.00239 -17.82945 -16.32409 -15.56834 -14.93676 -14.57169 -14.19063 -13.70731 -13.37139 -12.59125 -12.46621 -12.11334 -12.06971 -11.53960 -11.35326 -11.23708 -10.88910 -10.73636 -10.68285 -10.53296 -10.14806 -9.84792 -9.72003 -9.52857 -9.09334 -8.45796 -7.19322 -6.00931 -4.02526 3.32258 3.39387 3.44714 4.44536 4.76727 4.86726 4.93397 5.07967 5.35051 5.46104 5.59346 5.64080 5.82874 5.85563 5.89731 5.94694 6.06377 6.10329 6.25064 6.27730 6.35308 6.46201 6.52588 6.65737 6.81839 6.83961 7.30505 7.47060 7.82517 8.16936 8.46030 8.67592 9.07612 9.62433 11.10277 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.049815 B = 0.007643 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.942826 B = 3662.730945 C = 3792.109115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.070 4.070 4 C 0.081 3.919 5 N -0.685 5.685 6 C 0.194 3.806 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.898 3.102 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C -0.133 4.133 16 C -0.143 4.143 17 C -0.134 4.134 18 H 0.045 0.955 19 H 0.063 0.937 20 H 0.044 0.956 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.016 0.984 25 H 0.327 0.673 26 H 0.027 0.973 27 H -0.016 1.016 28 H 0.260 0.740 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 -3.084 12.971 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.071 4.071 4 C -0.049 4.049 5 N -0.316 5.316 6 C 0.067 3.933 7 C -0.550 4.550 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.726 3.274 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.170 4.170 16 C -0.180 4.180 17 C -0.172 4.172 18 H 0.064 0.936 19 H 0.082 0.918 20 H 0.063 0.937 21 H 0.092 0.908 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.034 0.966 25 H 0.144 0.856 26 H 0.045 0.955 27 H 0.001 0.999 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.365 -3.507 12.808 13.488 hybrid contribution 0.673 0.676 -0.894 1.307 sum 3.038 -2.831 11.914 12.617 Atomic orbital electron populations 1.21740 0.96347 1.00528 1.01970 1.21289 0.95648 0.95188 1.01219 1.21869 0.95176 0.95820 0.94226 1.21661 0.99550 0.94082 0.89567 1.60575 1.09575 1.60209 1.01194 1.19539 0.95232 0.91293 0.87197 1.21237 1.22943 1.20504 0.90322 0.91941 1.24996 0.95228 0.95106 0.99336 1.69976 1.30125 1.27746 1.25977 0.86441 0.78904 0.78775 0.83285 1.19665 1.21014 1.21131 1.22933 0.96640 0.97823 0.99650 1.22814 0.97419 0.98320 0.99488 1.23022 0.97283 0.99603 0.97253 0.93619 0.91775 0.93663 0.90834 0.93424 0.91359 0.96629 0.85649 0.95533 0.99853 0.93021 0.91381 0.90603 0.92171 0.90459 0.90532 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.27 37.16 0.34 -1.76 16 2 C -0.10 -1.39 5.29 -26.73 -0.14 -1.53 16 3 C -0.07 -1.04 0.68 -153.60 -0.10 -1.14 16 4 C 0.08 1.48 4.69 -3.82 -0.02 1.47 16 5 N -0.68 -14.87 6.34 -115.05 -0.73 -15.60 16 6 C 0.19 5.18 5.43 -4.97 -0.03 5.16 16 7 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 11 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 C -0.13 -1.81 7.11 -25.92 -0.18 -2.00 16 16 C -0.14 -1.78 7.72 -25.92 -0.20 -1.98 16 17 C -0.13 -1.68 6.96 -25.83 -0.18 -1.86 16 18 H 0.04 0.59 7.90 -51.93 -0.41 0.18 16 19 H 0.06 1.05 6.82 -51.93 -0.35 0.69 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 22 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 23 H 0.07 1.29 6.42 -51.92 -0.33 0.96 16 24 H 0.02 0.29 7.32 -51.93 -0.38 -0.09 16 25 H 0.33 6.86 7.31 -39.29 -0.29 6.57 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H -0.02 -0.46 8.14 -51.93 -0.42 -0.89 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.07 1.00 6.78 -51.93 -0.35 0.65 16 30 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.01 7.62 -51.93 -0.40 0.62 16 33 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 34 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 271.75 15.07 4.10 4.10 Total: -1.00 -29.48 271.75 -7.70 -37.18 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.85 Total: 1.08 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -0.93 Total: -17.21 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.01 Total: -42.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.48 -7.70 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232947238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.531 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds