Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46786 * 2 1 4 4 C 1.53005 * 112.85465 * 305.42048 * 3 2 1 5 5 N 1.46902 * 109.46981 * 292.49704 * 4 3 2 6 6 C 1.46904 * 110.99762 * 174.43948 * 5 4 3 7 7 C 1.50698 * 109.47094 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99668 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99972 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00003 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99807 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47171 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47099 * 120.00151 * 11 9 7 14 14 H 1.48500 * 109.46903 * 239.99754 * 11 9 7 15 15 C 1.53785 * 113.61458 * 174.22731 * 3 2 1 16 16 C 1.53783 * 87.08061 * 219.93403 * 15 3 2 17 17 C 1.53780 * 87.17331 * 25.38839 * 16 15 3 18 18 H 1.09003 * 109.47349 * 305.95619 * 1 2 3 19 19 H 1.09000 * 109.47366 * 65.95596 * 1 2 3 20 20 H 1.09002 * 109.46690 * 185.95166 * 1 2 3 21 21 H 1.08996 * 109.46961 * 240.00317 * 2 1 3 22 22 H 1.08998 * 109.46987 * 119.99862 * 2 1 3 23 23 H 1.09009 * 109.46757 * 52.49418 * 4 3 2 24 24 H 1.08996 * 109.47307 * 172.48936 * 4 3 2 25 25 H 1.00898 * 110.99724 * 298.39244 * 5 4 3 26 26 H 1.08998 * 109.47522 * 300.00092 * 6 5 4 27 27 H 1.09001 * 109.46979 * 59.99995 * 6 5 4 28 28 H 0.97001 * 119.99621 * 180.02562 * 10 9 7 29 29 H 1.08994 * 113.61478 * 105.38997 * 15 3 2 30 30 H 1.08999 * 113.68694 * 334.49477 * 15 3 2 31 31 H 1.09000 * 113.61326 * 139.97404 * 16 15 3 32 32 H 1.09000 * 113.61468 * 270.79735 * 16 15 3 33 33 H 1.09003 * 113.61560 * 89.16053 * 17 16 15 34 34 H 1.09002 * 113.61647 * 220.05558 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4675 2.2751 -1.1490 5 7 1.9923 1.7734 -2.4260 6 6 1.3635 2.4626 -3.5608 7 6 1.9260 1.9231 -4.8505 8 1 2.6753 1.1456 -4.8294 9 6 1.4841 2.4220 -6.0574 10 7 0.5720 3.3691 -6.0831 11 14 2.1809 1.7527 -7.6562 12 1 3.1847 0.7003 -7.3565 13 1 1.0829 1.1714 -8.4697 14 1 2.8283 2.8539 -8.4134 15 6 3.5670 1.5561 0.1417 16 6 3.3128 2.7571 1.0679 17 6 1.9393 2.1356 1.3710 18 1 -0.3634 0.6034 0.8319 19 1 -0.3634 0.4187 -0.9385 20 1 -0.3633 -1.0222 0.1066 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 0.3802 2.1976 -1.1473 24 1 1.7575 3.3181 -1.0215 25 1 2.9970 1.8589 -2.4627 26 1 0.2866 2.2959 -3.5357 27 1 1.5673 3.5314 -3.4949 28 1 0.2608 3.7198 -6.9323 29 1 4.0732 1.8202 -0.7867 30 1 4.0245 0.7049 0.6460 31 1 3.9770 2.7907 1.9316 32 1 3.2545 3.7098 0.5415 33 1 1.9496 1.4427 2.2124 34 1 1.1333 2.8668 1.4336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232947238.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -20.068110 kcal Electronic energy + Delta-G solvation = -12820.715280 eV Core-core repulsion = 10752.495666 eV Total energy + Delta-G solvation = -2068.219614 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.69846 -36.50066 -34.37703 -33.34822 -29.50966 -26.80714 -26.63868 -25.07989 -23.35069 -22.15049 -19.23505 -18.28230 -17.06201 -16.60669 -16.07044 -15.55770 -15.29514 -14.86492 -14.42534 -13.76758 -13.65067 -13.22779 -13.20094 -12.88543 -12.80149 -12.62129 -12.44083 -12.03928 -11.98046 -11.66847 -11.46747 -11.08240 -10.83190 -10.72016 -10.63980 -9.06529 -8.23839 -6.35262 1.39953 1.40923 1.55014 2.39062 3.09297 3.43845 3.73693 3.83134 4.00447 4.12255 4.23188 4.49195 4.66280 4.68368 4.73442 4.84754 4.90102 4.95202 5.06108 5.10182 5.14843 5.19987 5.23060 5.30501 5.35329 5.52761 5.60019 5.65805 5.68537 6.01655 6.45949 6.73313 6.89365 7.36002 8.88147 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.049815 B = 0.007643 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.942826 B = 3662.730945 C = 3792.109115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.077 4.077 4 C 0.083 3.917 5 N -0.679 5.679 6 C 0.210 3.790 7 C -0.534 4.534 8 H 0.064 0.936 9 C -0.001 4.001 10 N -0.935 5.935 11 Si 0.975 3.025 12 H -0.262 1.262 13 H -0.278 1.278 14 H -0.277 1.277 15 C -0.133 4.133 16 C -0.139 4.139 17 C -0.122 4.122 18 H 0.060 0.940 19 H 0.031 0.969 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.011 0.989 25 H 0.332 0.668 26 H -0.003 1.003 27 H -0.044 1.044 28 H 0.265 0.735 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 -4.123 13.937 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.078 4.078 4 C -0.047 4.047 5 N -0.310 5.310 6 C 0.082 3.918 7 C -0.572 4.572 8 H 0.083 0.917 9 C -0.199 4.199 10 N -0.575 5.575 11 Si 0.799 3.201 12 H -0.186 1.186 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.170 4.170 16 C -0.176 4.176 17 C -0.160 4.160 18 H 0.079 0.921 19 H 0.050 0.950 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.029 0.971 25 H 0.150 0.850 26 H 0.015 0.985 27 H -0.027 1.027 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.441 -4.551 13.798 14.932 hybrid contribution 0.308 1.018 -1.147 1.564 sum 3.750 -3.533 12.651 13.660 Atomic orbital electron populations 1.21705 0.96361 1.01438 1.00808 1.21279 0.95630 0.94792 1.01377 1.21828 0.96207 0.95659 0.94078 1.21703 0.99000 0.94627 0.89327 1.60462 1.09703 1.59477 1.01349 1.19181 0.93731 0.89946 0.88969 1.21571 1.23338 1.20858 0.91442 0.91749 1.25988 0.95345 0.95166 1.03360 1.70105 1.31265 1.28889 1.27284 0.85254 0.78351 0.78363 0.78138 1.18615 1.20322 1.20210 1.22980 0.95332 0.99224 0.99488 1.22782 0.97831 0.97169 0.99818 1.23010 0.97258 0.99584 0.96128 0.92135 0.95000 0.92271 0.93217 0.90614 0.92576 0.97123 0.85050 0.98495 1.02668 0.92611 0.93111 0.88565 0.89822 0.91751 0.88092 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.27 71.98 0.67 -3.31 16 2 C -0.09 -2.54 5.29 30.59 0.16 -2.38 16 3 C -0.08 -2.18 0.68 -51.59 -0.03 -2.22 16 4 C 0.08 3.09 4.69 86.30 0.41 3.50 16 5 N -0.68 -30.38 6.34 -517.91 -3.28 -33.67 16 6 C 0.21 11.69 5.43 85.56 0.46 12.16 16 7 C -0.53 -31.32 9.32 25.60 0.24 -31.08 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 10 N -0.94 -57.72 13.29 21.44 0.28 -57.43 16 11 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 C -0.13 -3.37 7.11 31.12 0.22 -3.14 16 16 C -0.14 -3.12 7.72 31.12 0.24 -2.88 16 17 C -0.12 -2.74 6.96 31.18 0.22 -2.52 16 18 H 0.06 1.45 7.90 -2.39 -0.02 1.43 16 19 H 0.03 1.05 6.82 -2.39 -0.02 1.04 16 20 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 23 H 0.06 2.21 6.42 -2.38 -0.02 2.20 16 24 H 0.01 0.41 7.32 -2.39 -0.02 0.39 16 25 H 0.33 14.25 7.31 -89.70 -0.66 13.59 16 26 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H -0.04 -2.66 8.14 -2.39 -0.02 -2.68 16 28 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.05 1.46 6.78 -2.39 -0.02 1.44 16 30 H 0.10 2.07 8.10 -2.39 -0.02 2.05 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.61 7.62 -2.39 -0.02 1.60 16 33 H 0.10 1.84 8.06 -2.39 -0.02 1.82 16 34 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 Total: -1.00 -63.98 271.75 2.47 -61.51 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.40 Total: 13.95 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 3.04 Total: -31.46 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -3.00 Total: -91.10 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.98 2.47 -61.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232947238.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.444 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds