Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00208 * 2 1 4 4 H 1.48498 * 109.47308 * 270.00698 * 3 2 1 5 5 H 1.48501 * 109.46762 * 30.00337 * 3 2 1 6 6 H 1.48497 * 109.47254 * 150.00224 * 3 2 1 7 7 C 1.37876 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47318 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47398 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47398 * 180.02562 * 11 10 9 13 13 C 1.53120 * 109.52343 * 184.99571 * 12 11 10 14 14 C 1.53042 * 109.27821 * 182.43872 * 13 12 11 15 15 N 1.46848 * 109.52160 * 59.18425 * 14 13 12 16 16 C 1.46847 * 111.19556 * 298.25623 * 15 14 13 17 17 C 1.53034 * 109.52616 * 61.74332 * 16 15 14 18 18 H 0.97005 * 120.00257 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.47105 * 59.99906 * 9 7 2 20 20 H 1.08998 * 109.46967 * 300.00279 * 9 7 2 21 21 H 1.08993 * 109.47213 * 59.99604 * 10 9 7 22 22 H 1.08998 * 109.47129 * 299.99604 * 10 9 7 23 23 H 1.09003 * 109.47427 * 59.99451 * 11 10 9 24 24 H 1.09008 * 109.46614 * 299.99851 * 11 10 9 25 25 H 1.08996 * 109.57542 * 305.15898 * 12 11 10 26 26 H 1.08997 * 109.49895 * 62.50324 * 13 12 11 27 27 H 1.08998 * 109.50437 * 302.38327 * 13 12 11 28 28 H 1.08995 * 109.46577 * 299.16647 * 14 13 12 29 29 H 1.08994 * 109.45929 * 179.19867 * 14 13 12 30 30 H 1.00901 * 111.00066 * 62.35005 * 15 14 13 31 31 H 1.09000 * 109.46087 * 181.75730 * 16 15 14 32 32 H 1.09004 * 109.46240 * 301.72671 * 16 15 14 33 33 H 1.08998 * 109.50577 * 180.88107 * 17 16 15 34 34 H 1.09000 * 109.50061 * 60.76065 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 6 2.4744 -6.1500 -0.0031 13 6 1.7142 -7.4731 -0.1294 14 6 2.7084 -8.6350 -0.0683 15 7 3.4389 -8.5892 1.2047 16 6 4.2143 -7.3482 1.3276 17 6 3.2651 -6.1480 1.3081 18 1 -0.4851 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8896 21 1 2.8725 -3.6047 0.8876 22 1 2.8711 -3.6040 -0.8923 23 1 0.8531 -5.0442 -0.8922 24 1 0.8540 -5.0455 0.8879 25 1 3.1612 -6.0428 -0.8427 26 1 1.1832 -7.4982 -1.0810 27 1 0.9998 -7.5620 0.6890 28 1 3.4140 -8.5531 -0.8950 29 1 2.1688 -9.5790 -0.1437 30 1 2.8109 -8.7020 1.9863 31 1 4.7685 -7.3577 2.2662 32 1 4.9129 -7.2724 0.4943 33 1 3.8422 -5.2264 1.3836 34 1 2.5752 -6.2160 2.1493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238543700.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = -41.414552 kcal Electronic energy + Delta-G solvation = -12533.525731 eV Core-core repulsion = 10464.380465 eV Total energy + Delta-G solvation = -2069.145265 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.96368 -34.89664 -32.82133 -30.89053 -30.45547 -26.84405 -24.00161 -22.85533 -21.71036 -20.05563 -19.77283 -16.25315 -15.95051 -14.67515 -14.61268 -14.41976 -14.21999 -13.68816 -13.16747 -12.45374 -12.27589 -12.10761 -11.58938 -11.22338 -11.18992 -11.12027 -10.82843 -10.72617 -10.42393 -10.25964 -10.03816 -9.54161 -9.22978 -9.00220 -8.34825 -8.30855 -5.97403 -3.99641 3.32853 3.38828 3.42440 4.29524 4.47595 4.79565 4.92292 5.13465 5.20022 5.38084 5.42466 5.45295 5.56175 5.81509 5.85333 5.95423 6.02202 6.09363 6.11461 6.20579 6.34123 6.53193 6.59783 6.85828 6.97463 6.99955 7.21966 7.32103 7.71496 7.87662 8.03704 8.46984 9.07973 9.64274 11.13995 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.075781 B = 0.006087 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.398132 B = 4598.991738 C = 4832.851362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.113 4.113 12 C -0.086 4.086 13 C -0.153 4.153 14 C 0.056 3.944 15 N -0.689 5.689 16 C 0.055 3.945 17 C -0.153 4.153 18 H 0.260 0.740 19 H 0.013 0.987 20 H 0.013 0.987 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.338 0.662 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 -14.457 1.274 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.105 4.105 13 C -0.192 4.192 14 C -0.073 4.073 15 N -0.317 5.317 16 C -0.074 4.074 17 C -0.192 4.192 18 H 0.069 0.931 19 H 0.032 0.968 20 H 0.032 0.968 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.263 -14.723 1.040 15.669 hybrid contribution -0.404 1.749 0.130 1.800 sum 4.859 -12.973 1.169 13.903 Atomic orbital electron populations 1.69968 1.06071 1.26507 1.51103 1.25034 0.94838 0.99235 0.95419 0.86611 0.79860 0.83550 0.78090 1.20674 1.21224 1.19897 1.21295 0.93004 0.91233 1.50254 0.92797 1.19106 0.94094 0.91542 0.96987 1.21645 0.99007 0.94033 1.00034 1.21691 0.97501 0.94605 1.01233 1.21216 0.97364 0.94427 0.97484 1.22332 0.98702 0.95936 1.02249 1.22018 0.95428 0.97378 0.92525 1.60720 1.29935 1.36473 1.04592 1.22045 0.95918 0.87423 1.02058 1.22339 0.99160 0.99797 0.97888 0.93061 0.96828 0.96816 0.93389 0.93713 0.92645 0.92792 0.91513 0.91609 0.92178 0.91144 0.91172 0.84506 0.91047 0.91132 0.90715 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.31 4.92 -26.73 -0.13 -2.44 16 11 C -0.11 -1.96 4.69 -26.73 -0.13 -2.08 16 12 C -0.09 -1.21 2.25 -90.50 -0.20 -1.42 16 13 C -0.15 -1.82 5.36 -26.65 -0.14 -1.96 16 14 C 0.06 0.60 6.55 -3.83 -0.03 0.57 16 15 N -0.69 -7.55 6.87 -113.82 -0.78 -8.33 16 16 C 0.06 0.63 6.55 -3.84 -0.03 0.60 16 17 C -0.15 -2.01 5.06 -26.65 -0.13 -2.14 16 18 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 19 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 20 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.05 0.99 6.64 -51.93 -0.34 0.65 16 22 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.34 3.38 8.86 -39.29 -0.35 3.03 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.06 6.70 -51.93 -0.35 0.71 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 270.03 15.07 4.07 4.07 Total: -1.00 -30.26 270.03 -8.41 -38.68 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.08 Total: -2.21 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -1.34 Total: -22.39 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.05 Total: -35.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.26 -8.41 -38.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543700.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.739 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds