Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00208 * 2 1 4 4 H 1.48498 * 109.47308 * 270.00698 * 3 2 1 5 5 H 1.48501 * 109.46762 * 30.00337 * 3 2 1 6 6 H 1.48497 * 109.47254 * 150.00224 * 3 2 1 7 7 C 1.37876 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47318 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47398 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47398 * 180.02562 * 11 10 9 13 13 C 1.53120 * 109.52343 * 184.99571 * 12 11 10 14 14 C 1.53042 * 109.27821 * 182.43872 * 13 12 11 15 15 N 1.46848 * 109.52160 * 59.18425 * 14 13 12 16 16 C 1.46847 * 111.19556 * 298.25623 * 15 14 13 17 17 C 1.53034 * 109.52616 * 61.74332 * 16 15 14 18 18 H 0.97005 * 120.00257 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.47105 * 59.99906 * 9 7 2 20 20 H 1.08998 * 109.46967 * 300.00279 * 9 7 2 21 21 H 1.08993 * 109.47213 * 59.99604 * 10 9 7 22 22 H 1.08998 * 109.47129 * 299.99604 * 10 9 7 23 23 H 1.09003 * 109.47427 * 59.99451 * 11 10 9 24 24 H 1.09008 * 109.46614 * 299.99851 * 11 10 9 25 25 H 1.08996 * 109.57542 * 305.15898 * 12 11 10 26 26 H 1.08997 * 109.49895 * 62.50324 * 13 12 11 27 27 H 1.08998 * 109.50437 * 302.38327 * 13 12 11 28 28 H 1.08995 * 109.46577 * 299.16647 * 14 13 12 29 29 H 1.08994 * 109.45929 * 179.19867 * 14 13 12 30 30 H 1.00901 * 111.00066 * 62.35005 * 15 14 13 31 31 H 1.09000 * 109.46087 * 181.75730 * 16 15 14 32 32 H 1.09004 * 109.46240 * 301.72671 * 16 15 14 33 33 H 1.08998 * 109.50577 * 180.88107 * 17 16 15 34 34 H 1.09000 * 109.50061 * 60.76065 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 6 2.4744 -6.1500 -0.0031 13 6 1.7142 -7.4731 -0.1294 14 6 2.7084 -8.6350 -0.0683 15 7 3.4389 -8.5892 1.2047 16 6 4.2143 -7.3482 1.3276 17 6 3.2651 -6.1480 1.3081 18 1 -0.4851 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8896 21 1 2.8725 -3.6047 0.8876 22 1 2.8711 -3.6040 -0.8923 23 1 0.8531 -5.0442 -0.8922 24 1 0.8540 -5.0455 0.8879 25 1 3.1612 -6.0428 -0.8427 26 1 1.1832 -7.4982 -1.0810 27 1 0.9998 -7.5620 0.6890 28 1 3.4140 -8.5531 -0.8950 29 1 2.1688 -9.5790 -0.1437 30 1 2.8109 -8.7020 1.9863 31 1 4.7685 -7.3577 2.2662 32 1 4.9129 -7.2724 0.4943 33 1 3.8422 -5.2264 1.3836 34 1 2.5752 -6.2160 2.1493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238543700.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = -60.593222 kcal Electronic energy + Delta-G solvation = -12534.357380 eV Core-core repulsion = 10464.380465 eV Total energy + Delta-G solvation = -2069.976915 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.99893 -36.52086 -34.71502 -32.26576 -31.68789 -28.57162 -25.67249 -23.89013 -23.08808 -21.59565 -21.01545 -18.46700 -16.98043 -16.53185 -15.98527 -15.54317 -15.26739 -15.02824 -14.47521 -14.34501 -13.70838 -13.36119 -13.09339 -12.87092 -12.72283 -12.47500 -12.31985 -12.13590 -12.08305 -11.56419 -11.43162 -11.32870 -11.08227 -10.86826 -10.57742 -9.26426 -8.22386 -6.34408 1.37741 1.39614 1.50859 2.39001 3.10165 3.43881 3.74962 3.84044 4.05975 4.24155 4.31775 4.47997 4.53741 4.55117 4.70186 4.72863 4.90947 4.96732 5.02561 5.09889 5.13615 5.16881 5.20770 5.31442 5.37560 5.48359 5.53982 5.75272 5.84009 6.11043 6.23334 6.51603 6.82957 7.35237 8.89540 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.075781 B = 0.006087 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.398132 B = 4598.991738 C = 4832.851362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.105 4.105 12 C -0.081 4.081 13 C -0.148 4.148 14 C 0.060 3.940 15 N -0.690 5.690 16 C 0.061 3.939 17 C -0.150 4.150 18 H 0.264 0.736 19 H -0.013 1.013 20 H -0.012 1.012 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.345 0.655 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 -15.055 1.391 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.100 4.100 13 C -0.187 4.187 14 C -0.069 4.069 15 N -0.319 5.319 16 C -0.068 4.068 17 C -0.190 4.190 18 H 0.073 0.927 19 H 0.005 0.995 20 H 0.006 0.994 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.163 0.837 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.528 -15.340 1.159 16.712 hybrid contribution -0.844 1.932 0.093 2.110 sum 5.684 -13.409 1.252 14.617 Atomic orbital electron populations 1.70103 1.07901 1.27823 1.51712 1.26029 0.95802 1.03520 0.94626 0.85420 0.78656 0.78225 0.78594 1.19641 1.20562 1.18684 1.21737 0.93519 0.92548 1.50579 0.92291 1.19043 0.94555 0.93535 0.94391 1.21459 0.97890 0.93849 1.00209 1.21588 0.97831 0.94131 1.00747 1.21142 0.96682 0.94128 0.98052 1.22285 0.98828 0.95078 1.02486 1.22027 0.95095 0.97434 0.92383 1.60731 1.30219 1.35865 1.05042 1.21997 0.95490 0.86624 1.02719 1.22314 0.99257 1.00222 0.97160 0.92726 0.99468 0.99404 0.92986 0.93596 0.93135 0.93318 0.91671 0.91293 0.92114 0.91173 0.89407 0.83745 0.89854 0.91187 0.92080 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.37 13.29 21.45 0.28 -58.08 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -32.19 9.11 25.60 0.23 -31.95 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -4.11 4.92 30.59 0.15 -3.96 16 11 C -0.11 -3.66 4.69 30.59 0.14 -3.52 16 12 C -0.08 -2.20 2.25 -10.71 -0.02 -2.22 16 13 C -0.15 -3.24 5.36 30.65 0.16 -3.07 16 14 C 0.06 1.13 6.55 86.33 0.57 1.69 16 15 N -0.69 -13.36 6.87 -514.01 -3.53 -16.89 16 16 C 0.06 1.27 6.55 86.32 0.57 1.83 16 17 C -0.15 -3.76 5.06 30.65 0.16 -3.60 16 18 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 19 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 20 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 21 H 0.05 2.16 6.64 -2.39 -0.02 2.14 16 22 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.34 6.00 8.86 -89.69 -0.79 5.21 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.06 1.69 6.70 -2.39 -0.02 1.67 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -64.62 270.03 1.59 -63.02 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.25 Total: 7.99 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 2.56 Total: -43.13 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -3.24 Total: -74.98 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.62 1.59 -63.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543700.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.430 kcal (2) G-P(sol) polarization free energy of solvation -64.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds