Wall clock time and date at job start Mon Mar 30 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46852 * 110.99905 * 2 1 4 4 C 1.53035 * 109.52263 * 185.84368 * 3 2 1 5 5 H 1.08991 * 109.54082 * 60.78072 * 4 3 2 6 6 C 1.50699 * 109.50310 * 180.88259 * 4 3 2 7 7 H 1.08002 * 120.00516 * 119.79605 * 6 4 3 8 8 C 1.37884 * 119.99783 * 299.79905 * 6 4 3 9 9 N 1.31514 * 119.99707 * 0.02562 * 8 6 4 10 10 Si 1.86796 * 119.99956 * 180.27458 * 8 6 4 11 11 H 1.48503 * 109.47407 * 269.72718 * 10 8 6 12 12 H 1.48505 * 109.47281 * 29.72474 * 10 8 6 13 13 H 1.48501 * 109.47274 * 149.72572 * 10 8 6 14 14 C 1.53123 * 109.27421 * 300.82009 * 4 3 2 15 15 C 1.53119 * 109.16279 * 57.65870 * 14 4 3 16 16 C 1.46846 * 111.00546 * 124.21193 * 2 1 3 17 17 C 1.53004 * 109.45860 * 54.14054 * 16 2 1 18 18 C 1.52995 * 109.46122 * 294.18140 * 16 2 1 19 19 H 1.08995 * 109.47016 * 295.78459 * 1 2 3 20 20 H 1.08996 * 109.47345 * 55.78928 * 1 2 3 21 21 H 1.09003 * 109.46782 * 175.78657 * 1 2 3 22 22 H 1.08996 * 109.46011 * 65.82687 * 3 2 1 23 23 H 1.08999 * 109.46203 * 305.85928 * 3 2 1 24 24 H 0.97005 * 119.99656 * 179.97438 * 9 8 6 25 25 H 1.09007 * 109.51716 * 177.56164 * 14 4 3 26 26 H 1.08994 * 109.52348 * 297.74772 * 14 4 3 27 27 H 1.08998 * 109.50025 * 62.28357 * 15 14 4 28 28 H 1.08998 * 109.50236 * 182.39973 * 15 14 4 29 29 H 1.09003 * 109.46950 * 180.02562 * 17 16 2 30 30 H 1.08991 * 109.47623 * 300.05762 * 17 16 2 31 31 H 1.09002 * 109.47244 * 60.06064 * 17 16 2 32 32 H 1.09003 * 109.47233 * 299.94173 * 18 16 2 33 33 H 1.09004 * 109.47862 * 59.94111 * 18 16 2 34 34 H 1.09000 * 109.47760 * 179.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1469 5 1 3.7819 0.8573 -1.0907 6 6 4.0597 2.7404 -0.1250 7 1 4.7621 3.0368 0.6400 8 6 3.6585 3.6486 -1.0818 9 7 2.8028 3.2878 -2.0130 10 14 4.3357 5.3893 -1.0594 11 1 3.4534 6.2532 -0.2344 12 1 5.7029 5.3812 -0.4796 13 1 4.3893 5.9176 -2.4462 14 6 4.1188 0.5370 1.0143 15 6 3.5182 -0.8715 1.0207 16 6 1.9954 -0.7708 1.1337 17 6 1.3892 -2.1755 1.1203 18 6 1.6265 -0.0692 2.4422 19 1 -0.3633 0.4470 0.9253 20 1 -0.3634 0.5778 -0.8498 21 1 -0.3633 -1.0249 -0.0755 22 1 1.7325 1.8608 0.9376 23 1 1.5634 1.9258 -0.8329 24 1 2.5203 3.9269 -2.6859 25 1 5.1998 0.4715 0.8903 26 1 3.8887 1.0354 1.9559 27 1 3.7814 -1.3835 0.0952 28 1 3.9100 -1.4303 1.8706 29 1 1.7794 -2.7477 1.9620 30 1 0.3046 -2.1040 1.2007 31 1 1.6522 -2.6759 0.1883 32 1 2.0585 0.9315 2.4524 33 1 0.5418 0.0026 2.5229 34 1 2.0167 -0.6413 3.2839 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259170172.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:08 Heat of formation + Delta-G solvation = -8.428387 kcal Electronic energy + Delta-G solvation = -13607.302732 eV Core-core repulsion = 11539.587854 eV Total energy + Delta-G solvation = -2067.714878 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.10457 -33.91746 -32.36104 -31.15315 -27.14446 -26.93636 -25.68856 -23.69618 -21.86187 -19.85250 -17.36900 -16.30884 -15.07676 -14.73648 -14.29665 -13.84878 -13.33739 -13.19774 -12.32558 -12.14771 -11.80857 -11.64904 -11.53697 -11.45106 -10.95406 -10.88548 -10.83282 -10.60947 -10.13962 -10.07159 -9.87706 -9.38252 -8.92280 -8.67332 -8.30957 -7.27285 -5.95336 -4.01706 3.31795 3.38863 3.42158 4.45426 4.79845 5.35598 5.37047 5.45831 5.69137 5.88426 5.95694 6.00158 6.04711 6.21069 6.25948 6.27779 6.34336 6.41865 6.54203 6.61592 6.71222 6.81871 6.95340 7.07177 7.19493 7.23823 7.74904 7.92456 8.04492 8.17966 8.27077 8.57009 9.03767 9.62879 11.10336 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.053487 B = 0.011160 C = 0.010184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.361641 B = 2508.290066 C = 2748.735586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.533 5.533 3 C 0.062 3.938 4 C 0.054 3.946 5 H 0.033 0.967 6 C -0.514 4.514 7 H 0.055 0.945 8 C 0.061 3.939 9 N -0.888 5.888 10 Si 0.889 3.111 11 H -0.282 1.282 12 H -0.275 1.275 13 H -0.287 1.287 14 C -0.113 4.113 15 C -0.102 4.102 16 C 0.107 3.893 17 C -0.139 4.139 18 C -0.181 4.181 19 H 0.015 0.985 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.010 0.990 23 H 0.102 0.898 24 H 0.260 0.740 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -6.802 5.529 9.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.064 4.064 4 C 0.035 3.965 5 H 0.051 0.949 6 C -0.553 4.553 7 H 0.073 0.927 8 C -0.140 4.140 9 N -0.526 5.526 10 Si 0.717 3.283 11 H -0.208 1.208 12 H -0.200 1.200 13 H -0.212 1.212 14 C -0.151 4.151 15 C -0.140 4.140 16 C 0.017 3.983 17 C -0.196 4.196 18 C -0.239 4.239 19 H 0.034 0.966 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.120 0.880 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.981 -6.954 4.922 9.026 hybrid contribution -0.043 1.451 0.756 1.637 sum -3.024 -5.503 5.678 8.465 Atomic orbital electron populations 1.22353 0.89825 1.00541 0.99712 1.62300 1.05706 1.17140 1.40577 1.22450 0.98951 0.84858 1.00170 1.18661 0.90339 0.94103 0.93379 0.94897 1.21224 1.25798 0.95934 1.12333 0.92718 1.24998 0.95129 0.98509 0.95346 1.69889 1.32559 1.34683 1.15517 0.86647 0.79456 0.85041 0.77165 1.20833 1.19950 1.21239 1.21726 0.98845 0.94054 1.00429 1.21600 0.93370 0.98560 1.00464 1.20952 0.95403 0.92944 0.89039 1.21927 1.00124 0.96214 1.01382 1.22500 1.00660 1.02426 0.98332 0.96640 0.92010 0.92491 0.97217 0.88012 0.93039 0.93534 0.93524 0.91973 0.93437 0.93142 0.93037 0.92224 0.91181 0.93445 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 8.78 60.07 0.53 0.96 16 2 N -0.53 -11.05 4.69 -227.21 -1.07 -12.11 16 3 C 0.06 1.51 4.22 -3.83 -0.02 1.49 16 4 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 5 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 6 C -0.51 -14.27 8.56 -34.44 -0.29 -14.56 16 7 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 9 N -0.89 -25.55 11.34 55.43 0.63 -24.92 16 10 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C -0.11 -2.43 4.92 -26.61 -0.13 -2.56 16 15 C -0.10 -1.90 4.89 -26.66 -0.13 -2.03 16 16 C 0.11 1.92 0.68 -131.62 -0.09 1.83 16 17 C -0.14 -2.07 8.05 37.16 0.30 -1.77 16 18 C -0.18 -3.08 7.46 37.15 0.28 -2.80 16 19 H 0.02 0.26 6.46 -51.93 -0.34 -0.07 16 20 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 21 H 0.06 0.89 6.21 -51.93 -0.32 0.56 16 22 H 0.01 0.24 6.19 -51.93 -0.32 -0.08 16 23 H 0.10 2.78 6.05 -51.93 -0.31 2.46 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 26 H 0.05 0.99 6.56 -51.93 -0.34 0.65 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.72 6.32 -51.93 -0.33 0.39 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.35 4.80 -51.93 -0.25 1.10 16 33 H 0.05 0.77 6.54 -51.93 -0.34 0.43 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 252.29 15.07 3.80 3.80 Total: -1.00 -28.20 252.29 -6.99 -35.19 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.47 Total: -1.69 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 0.14 Total: -16.66 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.44 Total: -37.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.20 -6.99 -35.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259170172.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.766 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds