Wall clock time and date at job start Mon Mar 30 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46852 * 110.99905 * 2 1 4 4 C 1.53035 * 109.52263 * 185.84368 * 3 2 1 5 5 H 1.08991 * 109.54082 * 60.78072 * 4 3 2 6 6 C 1.50699 * 109.50310 * 180.88259 * 4 3 2 7 7 H 1.08002 * 120.00516 * 119.79605 * 6 4 3 8 8 C 1.37884 * 119.99783 * 299.79905 * 6 4 3 9 9 N 1.31514 * 119.99707 * 0.02562 * 8 6 4 10 10 Si 1.86796 * 119.99956 * 180.27458 * 8 6 4 11 11 H 1.48503 * 109.47407 * 269.72718 * 10 8 6 12 12 H 1.48505 * 109.47281 * 29.72474 * 10 8 6 13 13 H 1.48501 * 109.47274 * 149.72572 * 10 8 6 14 14 C 1.53123 * 109.27421 * 300.82009 * 4 3 2 15 15 C 1.53119 * 109.16279 * 57.65870 * 14 4 3 16 16 C 1.46846 * 111.00546 * 124.21193 * 2 1 3 17 17 C 1.53004 * 109.45860 * 54.14054 * 16 2 1 18 18 C 1.52995 * 109.46122 * 294.18140 * 16 2 1 19 19 H 1.08995 * 109.47016 * 295.78459 * 1 2 3 20 20 H 1.08996 * 109.47345 * 55.78928 * 1 2 3 21 21 H 1.09003 * 109.46782 * 175.78657 * 1 2 3 22 22 H 1.08996 * 109.46011 * 65.82687 * 3 2 1 23 23 H 1.08999 * 109.46203 * 305.85928 * 3 2 1 24 24 H 0.97005 * 119.99656 * 179.97438 * 9 8 6 25 25 H 1.09007 * 109.51716 * 177.56164 * 14 4 3 26 26 H 1.08994 * 109.52348 * 297.74772 * 14 4 3 27 27 H 1.08998 * 109.50025 * 62.28357 * 15 14 4 28 28 H 1.08998 * 109.50236 * 182.39973 * 15 14 4 29 29 H 1.09003 * 109.46950 * 180.02562 * 17 16 2 30 30 H 1.08991 * 109.47623 * 300.05762 * 17 16 2 31 31 H 1.09002 * 109.47244 * 60.06064 * 17 16 2 32 32 H 1.09003 * 109.47233 * 299.94173 * 18 16 2 33 33 H 1.09004 * 109.47862 * 59.94111 * 18 16 2 34 34 H 1.09000 * 109.47760 * 179.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1469 5 1 3.7819 0.8573 -1.0907 6 6 4.0597 2.7404 -0.1250 7 1 4.7621 3.0368 0.6400 8 6 3.6585 3.6486 -1.0818 9 7 2.8028 3.2878 -2.0130 10 14 4.3357 5.3893 -1.0594 11 1 3.4534 6.2532 -0.2344 12 1 5.7029 5.3812 -0.4796 13 1 4.3893 5.9176 -2.4462 14 6 4.1188 0.5370 1.0143 15 6 3.5182 -0.8715 1.0207 16 6 1.9954 -0.7708 1.1337 17 6 1.3892 -2.1755 1.1203 18 6 1.6265 -0.0692 2.4422 19 1 -0.3633 0.4470 0.9253 20 1 -0.3634 0.5778 -0.8498 21 1 -0.3633 -1.0249 -0.0755 22 1 1.7325 1.8608 0.9376 23 1 1.5634 1.9258 -0.8329 24 1 2.5203 3.9269 -2.6859 25 1 5.1998 0.4715 0.8903 26 1 3.8887 1.0354 1.9559 27 1 3.7814 -1.3835 0.0952 28 1 3.9100 -1.4303 1.8706 29 1 1.7794 -2.7477 1.9620 30 1 0.3046 -2.1040 1.2007 31 1 1.6522 -2.6759 0.1883 32 1 2.0585 0.9315 2.4524 33 1 0.5418 0.0026 2.5229 34 1 2.0167 -0.6413 3.2839 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259170172.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:08 Heat of formation + Delta-G solvation = -26.177138 kcal Electronic energy + Delta-G solvation = -13608.072375 eV Core-core repulsion = 11539.587854 eV Total energy + Delta-G solvation = -2068.484522 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.68732 -35.83726 -34.00308 -32.99552 -28.78301 -28.39311 -27.29358 -25.53865 -23.55794 -21.61202 -18.97899 -18.41601 -16.71942 -16.53315 -15.93621 -15.45801 -14.93088 -14.70818 -14.19647 -13.74239 -13.49798 -13.30611 -12.93341 -12.84839 -12.74419 -12.45680 -12.42464 -12.26236 -11.95112 -11.75818 -11.57001 -11.19255 -10.79953 -10.54451 -10.41974 -8.90115 -8.08472 -6.23381 1.40011 1.40793 1.51314 2.42600 3.11911 3.35146 3.98892 4.06479 4.27666 4.41538 4.50576 4.60411 4.71705 4.77724 4.84140 4.89802 4.91247 4.99758 5.05204 5.11150 5.18573 5.26317 5.31109 5.34840 5.42953 5.56096 5.64778 5.98320 6.08120 6.26430 6.57715 6.61918 6.90890 7.45029 8.95811 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.053487 B = 0.011160 C = 0.010184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.361641 B = 2508.290066 C = 2748.735586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.082 3.918 4 C 0.051 3.949 5 H -0.008 1.008 6 C -0.537 4.537 7 H 0.052 0.948 8 C 0.013 3.987 9 N -0.915 5.915 10 Si 0.954 3.046 11 H -0.275 1.275 12 H -0.268 1.268 13 H -0.283 1.283 14 C -0.107 4.107 15 C -0.099 4.099 16 C 0.099 3.901 17 C -0.132 4.132 18 C -0.174 4.174 19 H 0.023 0.977 20 H 0.048 0.952 21 H 0.086 0.914 22 H 0.000 1.000 23 H 0.065 0.935 24 H 0.260 0.740 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 -7.775 6.970 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.046 4.046 4 C 0.032 3.968 5 H 0.010 0.990 6 C -0.576 4.576 7 H 0.070 0.930 8 C -0.186 4.186 9 N -0.554 5.554 10 Si 0.779 3.221 11 H -0.201 1.201 12 H -0.193 1.193 13 H -0.208 1.208 14 C -0.145 4.145 15 C -0.136 4.136 16 C 0.010 3.990 17 C -0.189 4.189 18 C -0.233 4.233 19 H 0.041 0.959 20 H 0.067 0.933 21 H 0.105 0.895 22 H 0.018 0.982 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.251 -7.943 6.374 10.690 hybrid contribution 0.042 1.721 0.296 1.747 sum -3.209 -6.221 6.670 9.669 Atomic orbital electron populations 1.22388 0.88035 1.02246 0.99538 1.62203 1.07481 1.14953 1.42765 1.21961 0.97865 0.86810 0.97938 1.18599 0.91651 0.93480 0.93056 0.99020 1.21585 1.26070 0.97407 1.12501 0.92994 1.25782 0.95342 1.02493 0.94966 1.70042 1.33420 1.35933 1.16005 0.85626 0.79008 0.80169 0.77283 1.20120 1.19269 1.20841 1.21608 0.98655 0.95652 0.98550 1.21598 0.94047 0.96496 1.01495 1.21157 0.95001 0.94514 0.88377 1.21867 1.00769 0.93845 1.02409 1.22423 1.01161 1.01025 0.98691 0.95900 0.93328 0.89547 0.98204 0.91702 0.93045 0.93753 0.93345 0.92876 0.90035 0.90528 0.91821 0.92559 0.94043 0.92580 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 8.78 127.69 1.12 2.01 16 2 N -0.55 -22.52 4.69 -872.76 -4.10 -26.62 16 3 C 0.08 4.08 4.22 86.32 0.36 4.44 16 4 C 0.05 2.69 2.26 -11.49 -0.03 2.66 16 5 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 6 C -0.54 -30.58 8.56 25.60 0.22 -30.36 16 7 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 8 C 0.01 0.74 5.30 84.66 0.45 1.19 16 9 N -0.91 -54.28 11.34 21.45 0.24 -54.04 16 10 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 C -0.11 -4.60 4.92 30.68 0.15 -4.45 16 15 C -0.10 -3.48 4.89 30.64 0.15 -3.33 16 16 C 0.10 3.33 0.68 3.55 0.00 3.33 16 17 C -0.13 -3.40 8.05 71.98 0.58 -2.82 16 18 C -0.17 -5.49 7.46 71.98 0.54 -4.95 16 19 H 0.02 0.75 6.46 -2.39 -0.02 0.73 16 20 H 0.05 1.77 8.09 -2.39 -0.02 1.75 16 21 H 0.09 2.45 6.21 -2.39 -0.01 2.44 16 22 H 0.00 -0.01 6.19 -2.39 -0.01 -0.02 16 23 H 0.06 3.70 6.05 -2.39 -0.01 3.68 16 24 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 25 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.05 2.04 6.56 -2.39 -0.02 2.03 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.50 6.32 -2.39 -0.02 1.48 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.54 4.80 -2.39 -0.01 1.52 16 33 H 0.06 1.65 6.54 -2.38 -0.02 1.63 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -62.00 252.29 2.78 -59.23 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.06 Total: 7.24 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 3.55 Total: -32.27 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.85 Total: -80.66 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -62.00 2.78 -59.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259170172.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.050 kcal (2) G-P(sol) polarization free energy of solvation -62.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds