Wall clock time and date at job start Mon Mar 30 2020 01:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46850 * 110.99523 * 2 1 4 4 C 1.53035 * 109.51790 * 174.16319 * 3 2 1 5 5 H 1.08999 * 109.50616 * 299.23804 * 4 3 2 6 6 C 1.50702 * 109.53582 * 179.14538 * 4 3 2 7 7 H 1.08006 * 119.99616 * 275.25588 * 6 4 3 8 8 C 1.37871 * 120.00443 * 95.25100 * 6 4 3 9 9 N 1.31512 * 120.00112 * 186.10829 * 8 6 4 10 10 Si 1.86799 * 119.99908 * 6.10999 * 8 6 4 11 11 H 1.48503 * 109.46969 * 84.77850 * 10 8 6 12 12 H 1.48498 * 109.47121 * 204.77659 * 10 8 6 13 13 H 1.48500 * 109.47219 * 324.77645 * 10 8 6 14 14 C 1.53122 * 109.28308 * 59.17899 * 4 3 2 15 15 C 1.53116 * 109.15781 * 302.34783 * 14 4 3 16 16 C 1.46849 * 110.99843 * 235.79453 * 2 1 3 17 17 C 1.53001 * 109.46205 * 305.85297 * 16 2 1 18 18 C 1.52996 * 109.46436 * 65.82967 * 16 2 1 19 19 H 1.09001 * 109.47396 * 63.95674 * 1 2 3 20 20 H 1.09005 * 109.46650 * 183.95242 * 1 2 3 21 21 H 1.09000 * 109.47031 * 303.94467 * 1 2 3 22 22 H 1.09000 * 109.45825 * 54.15031 * 3 2 1 23 23 H 1.08998 * 109.45544 * 294.17333 * 3 2 1 24 24 H 0.96999 * 120.00161 * 180.02562 * 9 8 6 25 25 H 1.08995 * 109.51634 * 62.24955 * 14 4 3 26 26 H 1.08994 * 109.52575 * 182.43742 * 14 4 3 27 27 H 1.09001 * 109.49749 * 177.59065 * 15 14 4 28 28 H 1.09000 * 109.50265 * 297.70539 * 15 14 4 29 29 H 1.08998 * 109.47327 * 59.99988 * 17 16 2 30 30 H 1.08996 * 109.47057 * 180.02562 * 17 16 2 31 31 H 1.08999 * 109.46835 * 300.00225 * 17 16 2 32 32 H 1.09007 * 109.47214 * 60.00254 * 18 16 2 33 33 H 1.09003 * 109.47251 * 179.97438 * 18 16 2 34 34 H 1.09001 * 109.47304 * 299.99952 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 1 3.7814 0.8568 1.0905 6 6 4.0605 2.7401 0.1257 7 1 4.2633 3.2266 -0.8171 8 6 4.2976 3.4054 1.3097 9 7 4.6559 4.6706 1.2928 10 14 4.1102 2.5095 2.9381 11 1 5.3682 1.7856 3.2525 12 1 3.8227 3.4923 4.0136 13 1 2.9908 1.5383 2.8428 14 6 4.1188 0.5370 -1.0144 15 6 3.5181 -0.8713 -1.0209 16 6 1.9953 -0.7707 -1.1338 17 6 1.3891 -2.1755 -1.1205 18 6 1.6265 -0.0688 -2.4423 19 1 -0.3634 0.4512 -0.9233 20 1 -0.3633 -1.0253 0.0708 21 1 -0.3633 0.5738 0.8525 22 1 1.5634 1.9257 0.8330 23 1 1.7324 1.8607 -0.9376 24 1 4.8231 5.1386 2.1258 25 1 3.8887 1.0356 -1.9560 26 1 5.1997 0.4715 -0.8906 27 1 3.9099 -1.4301 -1.8709 28 1 3.7814 -1.3835 -0.0955 29 1 0.3045 -2.1040 -1.2018 30 1 1.7800 -2.7478 -1.9618 31 1 1.6514 -2.6755 -0.1882 32 1 2.0580 0.9322 -2.4519 33 1 2.0175 -0.6406 -3.2840 34 1 0.5419 0.0022 -2.5234 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259170174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:09 Heat of formation + Delta-G solvation = -28.173992 kcal Electronic energy + Delta-G solvation = -13595.149102 eV Core-core repulsion = 11526.577991 eV Total energy + Delta-G solvation = -2068.571112 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.80298 -35.80822 -34.02243 -33.48780 -29.14643 -28.44979 -27.32864 -25.35960 -23.65855 -21.50628 -19.32500 -18.77831 -16.83621 -16.42987 -15.94851 -15.48146 -14.90189 -14.88430 -14.62031 -13.90751 -13.69272 -13.30251 -13.01658 -12.87848 -12.74162 -12.50018 -12.43064 -12.26760 -11.97757 -11.75643 -11.65092 -11.17515 -10.90686 -10.69815 -10.61562 -9.03962 -8.29816 -6.33168 1.35290 1.37280 1.51179 2.36220 2.98469 3.22555 3.94464 4.01840 4.20165 4.30829 4.43902 4.55721 4.65405 4.69619 4.77106 4.81360 4.86531 4.95870 4.99588 5.02196 5.07656 5.13521 5.23178 5.26576 5.34297 5.45960 5.67127 5.69638 5.75785 6.20672 6.40393 6.46868 6.76463 7.33843 8.87022 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046143 B = 0.012242 C = 0.011557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.668429 B = 2286.708408 C = 2422.125794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.075 3.925 4 C 0.018 3.982 5 H 0.031 0.969 6 C -0.515 4.515 7 H 0.029 0.971 8 C 0.014 3.986 9 N -0.950 5.950 10 Si 0.942 3.058 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.247 1.247 14 C -0.105 4.105 15 C -0.101 4.101 16 C 0.101 3.899 17 C -0.132 4.132 18 C -0.177 4.177 19 H 0.026 0.974 20 H 0.089 0.911 21 H 0.056 0.944 22 H 0.041 0.959 23 H 0.019 0.981 24 H 0.265 0.735 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 -14.083 -3.746 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.053 4.053 4 C -0.001 4.001 5 H 0.049 0.951 6 C -0.553 4.553 7 H 0.048 0.952 8 C -0.183 4.183 9 N -0.590 5.590 10 Si 0.766 3.234 11 H -0.192 1.192 12 H -0.215 1.215 13 H -0.171 1.171 14 C -0.143 4.143 15 C -0.139 4.139 16 C 0.011 3.989 17 C -0.189 4.189 18 C -0.235 4.235 19 H 0.045 0.955 20 H 0.107 0.893 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.038 0.962 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.376 -14.170 -3.208 16.294 hybrid contribution -0.025 1.097 0.042 1.098 sum -7.401 -13.073 -3.166 15.353 Atomic orbital electron populations 1.22484 0.87365 1.02850 1.00117 1.62233 1.08023 1.13810 1.43149 1.22185 0.97132 0.87891 0.98141 1.19115 0.91729 0.93428 0.95848 0.95081 1.21288 1.42179 0.99096 0.92750 0.95248 1.25930 0.94277 0.95152 1.02965 1.70064 1.49363 1.11019 1.28519 0.85805 0.80116 0.78743 0.78729 1.19250 1.21549 1.17070 1.21565 0.99047 0.95477 0.98174 1.21653 0.93899 0.96254 1.02086 1.21155 0.94992 0.94562 0.88156 1.21867 1.00848 0.93590 1.02597 1.22444 1.01379 1.00962 0.98732 0.95514 0.89252 0.92484 0.94080 0.96245 0.92589 0.93654 0.93467 0.89988 0.92043 0.91647 0.90671 0.92207 0.94115 0.90683 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 8.78 127.69 1.12 1.68 16 2 N -0.55 -19.15 4.69 -872.71 -4.10 -23.25 16 3 C 0.07 3.23 4.44 86.32 0.38 3.62 16 4 C 0.02 0.86 1.95 -11.49 -0.02 0.84 16 5 H 0.03 1.52 5.24 -2.39 -0.01 1.51 16 6 C -0.51 -29.95 8.86 25.60 0.23 -29.72 16 7 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 8 C 0.01 0.82 5.47 84.65 0.46 1.28 16 9 N -0.95 -60.29 13.96 21.44 0.30 -59.99 16 10 Si 0.94 45.86 27.02 68.60 1.85 47.72 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 13 H -0.25 -11.51 6.77 99.48 0.67 -10.84 16 14 C -0.10 -4.25 4.96 30.67 0.15 -4.10 16 15 C -0.10 -3.20 4.89 30.64 0.15 -3.05 16 16 C 0.10 2.97 0.68 3.55 0.00 2.97 16 17 C -0.13 -2.90 8.04 71.98 0.58 -2.32 16 18 C -0.18 -5.00 7.46 71.98 0.54 -4.47 16 19 H 0.03 0.73 6.47 -2.39 -0.02 0.71 16 20 H 0.09 2.05 6.20 -2.38 -0.01 2.04 16 21 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 22 H 0.04 1.90 8.09 -2.39 -0.02 1.88 16 23 H 0.02 0.87 6.19 -2.39 -0.01 0.85 16 24 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 25 H 0.04 1.86 6.56 -2.39 -0.02 1.85 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.28 6.32 -2.39 -0.02 1.27 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 1.39 4.80 -2.38 -0.01 1.38 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.54 6.55 -2.39 -0.02 1.53 16 Total: -1.00 -65.34 251.92 2.67 -62.67 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.02 Total: 6.13 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 3.59 Total: -33.28 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -3.80 Total: -83.23 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.85 Total: 47.72 kcal Total: -65.34 2.67 -62.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259170174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.491 kcal (2) G-P(sol) polarization free energy of solvation -65.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds