Wall clock time and date at job start Mon Mar 30 2020 01:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46854 * 110.99648 * 2 1 4 4 C 1.53037 * 109.52285 * 185.80147 * 3 2 1 5 5 C 1.53114 * 109.31211 * 300.88400 * 4 3 2 6 6 H 1.09007 * 109.52681 * 297.73305 * 5 4 3 7 7 C 1.50700 * 109.52732 * 177.54197 * 5 4 3 8 8 H 1.08004 * 119.99872 * 240.00305 * 7 5 4 9 9 C 1.37874 * 120.00023 * 59.99434 * 7 5 4 10 10 N 1.31517 * 119.99869 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 120.00383 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46625 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47412 * 120.00057 * 11 9 7 14 14 H 1.48501 * 109.47341 * 240.00322 * 11 9 7 15 15 C 1.53125 * 109.16368 * 57.63311 * 5 4 3 16 16 C 1.46840 * 111.00367 * 124.25439 * 2 1 3 17 17 C 1.53002 * 109.46381 * 54.14334 * 16 2 1 18 18 C 1.53003 * 109.45410 * 294.17091 * 16 2 1 19 19 H 1.08999 * 109.47502 * 295.74346 * 1 2 3 20 20 H 1.08996 * 109.47397 * 55.74738 * 1 2 3 21 21 H 1.09003 * 109.47015 * 175.74892 * 1 2 3 22 22 H 1.09000 * 109.42692 * 65.80880 * 3 2 1 23 23 H 1.09000 * 109.49358 * 305.83873 * 3 2 1 24 24 H 1.09002 * 109.50283 * 180.92217 * 4 3 2 25 25 H 1.09003 * 109.50113 * 60.84405 * 4 3 2 26 26 H 0.97004 * 119.99771 * 179.97438 * 10 9 7 27 27 H 1.09005 * 109.49488 * 62.28510 * 15 5 4 28 28 H 1.08998 * 109.50470 * 182.40590 * 15 5 4 29 29 H 1.08998 * 109.47279 * 180.02562 * 17 16 2 30 30 H 1.09005 * 109.47056 * 300.05716 * 17 16 2 31 31 H 1.09001 * 109.47016 * 60.05499 * 17 16 2 32 32 H 1.08991 * 109.47003 * 299.95536 * 18 16 2 33 33 H 1.09004 * 109.46543 * 59.95041 * 18 16 2 34 34 H 1.09000 * 109.47152 * 179.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5181 1.3343 -0.1458 5 6 4.1188 0.5362 1.0147 6 1 3.8887 1.0339 1.9568 7 6 5.6133 0.4457 0.8434 8 1 6.0890 -0.5197 0.7529 9 6 6.3733 1.5953 0.8021 10 7 5.7941 2.7709 0.9126 11 14 8.2258 1.4832 0.5891 12 1 8.6271 0.0569 0.4896 13 1 8.6258 2.1982 -0.6494 14 1 8.8971 2.1053 1.7586 15 6 3.5181 -0.8723 1.0201 16 6 1.9953 -0.7716 1.1331 17 6 1.3891 -2.1764 1.1187 18 6 1.6264 -0.0706 2.4421 19 1 -0.3634 0.4463 0.9256 20 1 -0.3634 0.5784 -0.8494 21 1 -0.3633 -1.0249 -0.0762 22 1 1.7318 1.8604 0.9377 23 1 1.5638 1.9262 -0.8330 24 1 3.9099 2.3514 -0.1293 25 1 3.7819 0.8580 -1.0901 26 1 6.3289 3.5797 0.8839 27 1 3.7814 -1.3836 0.0942 28 1 3.9099 -1.4317 1.8696 29 1 1.7794 -2.7491 1.9600 30 1 0.3044 -2.1049 1.1992 31 1 1.6521 -2.6760 0.1863 32 1 2.0584 0.9299 2.4527 33 1 0.5417 0.0010 2.5227 34 1 2.0166 -0.6434 3.2834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259175924.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:35 Heat of formation + Delta-G solvation = -25.672888 kcal Electronic energy + Delta-G solvation = -13567.540446 eV Core-core repulsion = 11499.077791 eV Total energy + Delta-G solvation = -2068.462656 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72488 -35.91595 -33.71892 -33.12533 -29.11526 -28.07167 -27.21618 -25.83210 -23.39618 -21.66244 -19.02968 -18.32964 -16.89035 -16.34006 -16.04790 -15.42411 -15.07382 -14.71974 -14.13116 -13.75920 -13.58477 -13.04591 -12.94217 -12.84375 -12.69841 -12.56285 -12.39678 -12.16312 -12.03071 -11.83273 -11.66333 -11.19892 -10.68366 -10.59472 -10.29660 -9.02291 -8.06955 -6.19999 1.39112 1.41032 1.52429 2.43968 3.14122 3.19806 4.03320 4.10570 4.26695 4.40447 4.43342 4.61906 4.72283 4.73526 4.82293 4.91200 4.95810 5.01443 5.03052 5.07134 5.12476 5.28664 5.30678 5.41117 5.48600 5.61207 5.64875 6.06277 6.08417 6.37971 6.43820 6.47570 6.92379 7.47425 8.97426 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.057220 B = 0.010622 C = 0.009826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.225770 B = 2635.477158 C = 2848.778192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.064 3.936 4 C -0.097 4.097 5 C 0.046 3.954 6 H -0.003 1.003 7 C -0.532 4.532 8 H 0.048 0.952 9 C 0.012 3.988 10 N -0.918 5.918 11 Si 0.951 3.049 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.280 1.280 15 C -0.086 4.086 16 C 0.104 3.896 17 C -0.131 4.131 18 C -0.172 4.172 19 H 0.027 0.973 20 H 0.069 0.931 21 H 0.084 0.916 22 H 0.022 0.978 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.025 0.975 26 H 0.259 0.741 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.556 -5.719 0.151 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.064 4.064 4 C -0.135 4.135 5 C 0.028 3.972 6 H 0.015 0.985 7 C -0.571 4.571 8 H 0.066 0.934 9 C -0.186 4.186 10 N -0.557 5.557 11 Si 0.777 3.223 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.124 4.124 16 C 0.014 3.986 17 C -0.188 4.188 18 C -0.231 4.231 19 H 0.045 0.955 20 H 0.088 0.912 21 H 0.103 0.897 22 H 0.040 0.960 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.360 -5.772 -0.283 11.000 hybrid contribution 1.034 0.843 0.645 1.482 sum -8.326 -4.929 0.362 9.682 Atomic orbital electron populations 1.22511 0.86840 1.02988 1.00489 1.62128 1.08164 1.13298 1.42902 1.22068 0.96154 0.89188 0.98994 1.21431 0.92403 1.01550 0.98138 1.18668 0.93289 0.91877 0.93413 0.98496 1.21647 0.93789 0.92306 1.49323 0.93368 1.25724 1.02643 0.95215 0.95048 1.70024 1.36449 0.97745 1.51531 0.85606 0.80821 0.78211 0.77624 1.19276 1.20634 1.20621 1.21559 0.93265 0.97989 0.99630 1.21107 0.94699 0.94467 0.88286 1.21864 1.00924 0.93842 1.02215 1.22401 1.01215 1.00871 0.98603 0.95498 0.91243 0.89711 0.96020 0.91363 0.92165 0.95601 0.93144 0.93761 0.93352 0.91640 0.90957 0.92353 0.94213 0.91456 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.78 127.69 1.12 1.63 16 2 N -0.54 -18.99 4.69 -872.74 -4.09 -23.08 16 3 C 0.06 2.56 5.17 86.32 0.45 3.01 16 4 C -0.10 -4.81 5.12 30.64 0.16 -4.65 16 5 C 0.05 2.37 1.86 -11.46 -0.02 2.35 16 6 H 0.00 -0.17 6.56 -2.38 -0.02 -0.19 16 7 C -0.53 -30.37 8.57 25.60 0.22 -30.15 16 8 H 0.05 2.73 7.75 -2.91 -0.02 2.70 16 9 C 0.01 0.67 5.30 84.65 0.45 1.12 16 10 N -0.92 -54.07 11.35 21.45 0.24 -53.83 16 11 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 C -0.09 -3.72 4.12 30.65 0.13 -3.60 16 16 C 0.10 3.61 0.68 3.55 0.00 3.61 16 17 C -0.13 -3.55 8.05 71.98 0.58 -2.97 16 18 C -0.17 -5.77 7.46 71.98 0.54 -5.24 16 19 H 0.03 0.68 6.46 -2.39 -0.02 0.67 16 20 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 21 H 0.08 1.91 6.21 -2.39 -0.01 1.90 16 22 H 0.02 0.89 6.19 -2.39 -0.01 0.88 16 23 H 0.07 2.50 8.09 -2.39 -0.02 2.48 16 24 H 0.06 3.35 6.15 -2.39 -0.01 3.33 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.62 6.32 -2.38 -0.02 1.61 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.57 4.80 -2.39 -0.01 1.55 16 33 H 0.07 1.90 6.54 -2.38 -0.02 1.89 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -61.21 252.33 2.85 -58.36 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.06 Total: 6.69 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 3.62 Total: -34.87 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -3.85 Total: -76.91 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.21 2.85 -58.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259175924.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.691 kcal (2) G-P(sol) polarization free energy of solvation -61.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds