Wall clock time and date at job start Mon Mar 30 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46848 * 110.99938 * 2 1 4 4 C 1.53048 * 109.57298 * 174.18963 * 3 2 1 5 5 C 1.53120 * 109.27450 * 59.08726 * 4 3 2 6 6 C 1.53123 * 109.21163 * 302.43753 * 5 4 3 7 7 H 1.09002 * 109.50248 * 297.64565 * 6 5 4 8 8 C 1.50691 * 109.50296 * 177.56339 * 6 5 4 9 9 H 1.08000 * 120.00275 * 239.99617 * 8 6 5 10 10 C 1.37883 * 120.00199 * 60.00045 * 8 6 5 11 11 N 1.31513 * 119.99936 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 120.00132 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47007 * 90.00167 * 12 10 8 14 14 H 1.48504 * 109.47364 * 209.99853 * 12 10 8 15 15 H 1.48500 * 109.47361 * 330.00083 * 12 10 8 16 16 C 1.46842 * 111.00192 * 235.79071 * 2 1 3 17 17 C 1.52997 * 109.46346 * 65.82246 * 16 2 1 18 18 C 1.53004 * 109.46195 * 305.85492 * 16 2 1 19 19 H 1.09004 * 109.47448 * 184.21302 * 1 2 3 20 20 H 1.09003 * 109.47371 * 304.20678 * 1 2 3 21 21 H 1.08996 * 109.47611 * 64.21033 * 1 2 3 22 22 H 1.08999 * 109.46555 * 294.17605 * 3 2 1 23 23 H 1.09000 * 109.46248 * 54.14574 * 3 2 1 24 24 H 1.09000 * 109.45669 * 299.17222 * 4 3 2 25 25 H 1.09003 * 109.55501 * 179.05467 * 4 3 2 26 26 H 1.09002 * 109.52427 * 182.50027 * 5 4 3 27 27 H 1.08995 * 109.52208 * 62.37346 * 5 4 3 28 28 H 0.96992 * 120.00214 * 179.97438 * 11 10 8 29 29 H 1.09000 * 109.47024 * 180.02562 * 17 16 2 30 30 H 1.09003 * 109.46943 * 300.05719 * 17 16 2 31 31 H 1.08999 * 109.46928 * 60.05524 * 17 16 2 32 32 H 1.08999 * 109.46886 * 299.94650 * 18 16 2 33 33 H 1.09003 * 109.47096 * 59.94773 * 18 16 2 34 34 H 1.08995 * 109.47229 * 179.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5182 1.3355 0.1460 5 6 4.1188 0.5370 -1.0143 6 6 3.5181 -0.8715 -1.0208 7 1 3.7819 -1.3839 -0.0956 8 6 4.0597 -1.6440 -2.1958 9 1 3.3852 -2.0282 -2.9467 10 6 5.4164 -1.8605 -2.3123 11 7 6.2379 -1.3924 -1.3982 12 14 6.0877 -2.8187 -3.7684 13 1 6.3935 -1.8816 -4.8791 14 1 7.3278 -3.5289 -3.3645 15 1 5.0757 -3.8075 -4.2194 16 6 1.9952 -0.7707 -1.1337 17 6 1.6263 -0.0690 -2.4423 18 6 1.3890 -2.1755 -1.1203 19 1 -0.3634 -1.0249 0.0755 20 1 -0.3634 0.5777 0.8499 21 1 -0.3634 0.4471 -0.9252 22 1 1.7324 1.8609 -0.9376 23 1 1.5633 1.9257 0.8330 24 1 3.7815 0.8592 1.0904 25 1 3.9101 2.3525 0.1291 26 1 5.1997 0.4714 -0.8905 27 1 3.8896 1.0350 -1.9563 28 1 7.1922 -1.5450 -1.4799 29 1 2.0166 -0.6413 -3.2839 30 1 0.5417 0.0028 -2.5228 31 1 2.0585 0.9316 -2.4523 32 1 1.6521 -2.6758 -0.1884 33 1 0.3043 -2.1040 -1.2008 34 1 1.7792 -2.7476 -1.9621 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259480659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:09 Heat of formation + Delta-G solvation = -21.600855 kcal Electronic energy + Delta-G solvation = -13789.477934 eV Core-core repulsion = 11721.191855 eV Total energy + Delta-G solvation = -2068.286079 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.74057 -35.55934 -34.11947 -33.03479 -28.72860 -28.03540 -27.00845 -26.29000 -22.99949 -21.79871 -19.16187 -18.10853 -16.86677 -16.30777 -15.87826 -15.47146 -15.05808 -14.59556 -14.08127 -13.77728 -13.41641 -13.10872 -12.96213 -12.85171 -12.62643 -12.52350 -12.28699 -12.16597 -12.04034 -11.78833 -11.49665 -11.12276 -10.63145 -10.43268 -10.29841 -8.93225 -8.01531 -6.12453 1.41785 1.43187 1.52221 2.46164 3.24358 3.26132 4.16853 4.21898 4.30924 4.35974 4.54571 4.62138 4.71219 4.76360 4.85424 4.90721 4.98433 5.04520 5.08012 5.14631 5.18167 5.37632 5.37934 5.53258 5.56975 5.59407 5.72326 6.05850 6.22261 6.32159 6.51477 6.60183 6.99681 7.53797 9.03499 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046245 B = 0.013176 C = 0.011360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.328365 B = 2124.625773 C = 2464.167307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.551 5.551 3 C 0.062 3.938 4 C -0.113 4.113 5 C -0.108 4.108 6 C 0.069 3.931 7 H -0.014 1.014 8 C -0.512 4.512 9 H 0.059 0.941 10 C 0.009 3.991 11 N -0.920 5.920 12 Si 0.947 3.053 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.267 1.267 16 C 0.113 3.887 17 C -0.158 4.158 18 C -0.122 4.122 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.028 0.972 22 H 0.033 0.967 23 H 0.083 0.917 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.029 0.971 28 H 0.257 0.743 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 3.689 0.488 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.275 5.275 3 C -0.065 4.065 4 C -0.151 4.151 5 C -0.146 4.146 6 C 0.050 3.950 7 H 0.004 0.996 8 C -0.551 4.551 9 H 0.077 0.923 10 C -0.188 4.188 11 N -0.561 5.561 12 Si 0.773 3.227 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.191 1.191 16 C 0.024 3.976 17 C -0.216 4.216 18 C -0.180 4.180 19 H 0.090 0.910 20 H 0.094 0.906 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.266 3.459 0.971 9.938 hybrid contribution 0.720 -0.185 -1.374 1.562 sum -8.546 3.274 -0.403 9.161 Atomic orbital electron populations 1.22462 0.87057 1.02520 1.00605 1.62131 1.08121 1.13588 1.43673 1.22042 0.94939 0.89353 1.00198 1.21605 0.95353 0.99380 0.98785 1.21522 1.01141 0.96617 0.95293 1.18530 0.89458 0.92602 0.94411 0.99561 1.21545 0.91966 1.33325 1.08275 0.92303 1.25699 0.97729 0.96981 0.98426 1.70049 1.03060 1.47198 1.35747 0.85730 0.77825 0.79039 0.80102 1.20449 1.21444 1.19146 1.20993 0.95822 0.93015 0.87721 1.22263 0.99789 1.00618 0.98977 1.21747 0.99433 0.95654 1.01142 0.90991 0.90591 0.95362 0.94903 0.89829 0.93637 0.91550 0.92809 0.95274 0.93433 0.92919 0.92447 0.93386 0.94033 0.91697 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 8.78 127.69 1.12 1.71 16 2 N -0.55 -19.92 4.69 -872.74 -4.10 -24.02 16 3 C 0.06 2.12 5.17 86.33 0.45 2.56 16 4 C -0.11 -4.48 6.10 30.65 0.19 -4.29 16 5 C -0.11 -5.22 4.71 30.68 0.14 -5.07 16 6 C 0.07 3.48 1.57 -11.49 -0.02 3.46 16 7 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 8 C -0.51 -27.76 7.11 25.60 0.18 -27.58 16 9 H 0.06 3.10 5.68 -2.91 -0.02 3.08 16 10 C 0.01 0.52 5.30 84.66 0.45 0.97 16 11 N -0.92 -54.15 11.35 21.45 0.24 -53.90 16 12 Si 0.95 43.98 29.54 68.60 2.03 46.00 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 16 C 0.11 4.63 0.44 3.55 0.00 4.63 16 17 C -0.16 -5.95 7.20 71.98 0.52 -5.43 16 18 C -0.12 -4.66 7.80 71.98 0.56 -4.10 16 19 H 0.07 1.91 6.21 -2.39 -0.01 1.90 16 20 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 21 H 0.03 0.74 6.46 -2.39 -0.02 0.73 16 22 H 0.03 1.09 6.19 -2.39 -0.01 1.08 16 23 H 0.08 2.38 8.09 -2.39 -0.02 2.37 16 24 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 2.98 6.15 -2.39 -0.01 2.96 16 27 H 0.03 1.39 6.56 -2.39 -0.02 1.38 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.05 2.13 6.57 -2.39 -0.02 2.11 16 30 H 0.06 1.83 6.54 -2.39 -0.02 1.81 16 31 H 0.05 1.84 4.80 -2.39 -0.01 1.83 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.03 6.32 -2.39 -0.02 2.01 16 34 H 0.05 2.10 6.67 -2.39 -0.02 2.08 16 Total: -1.00 -59.96 246.29 2.83 -57.13 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.07 Total: 7.93 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 3.59 Total: -33.13 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -3.85 Total: -77.92 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -59.96 2.83 -57.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259480659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.525 kcal (2) G-P(sol) polarization free energy of solvation -59.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds