Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46837 * 111.00400 * 2 1 4 4 C 1.53033 * 109.52869 * 185.83699 * 3 2 1 5 5 C 1.53125 * 109.28004 * 300.82084 * 4 3 2 6 6 C 1.53096 * 109.15121 * 57.65006 * 5 4 3 7 7 H 1.08999 * 109.51104 * 62.29172 * 6 5 4 8 8 C 1.50703 * 109.48980 * 182.40033 * 6 5 4 9 9 H 1.08003 * 119.99796 * 119.80767 * 8 6 5 10 10 C 1.37876 * 120.00009 * 299.81608 * 8 6 5 11 11 N 1.31514 * 120.00002 * 359.97438 * 10 8 6 12 12 Si 1.86794 * 119.99900 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47530 * 89.99874 * 12 10 8 14 14 H 1.48503 * 109.46945 * 209.99676 * 12 10 8 15 15 H 1.48501 * 109.47319 * 329.99339 * 12 10 8 16 16 C 1.46855 * 110.99563 * 124.20977 * 2 1 3 17 17 C 1.52997 * 109.46173 * 294.17380 * 16 2 1 18 18 C 1.52997 * 109.46323 * 54.15659 * 16 2 1 19 19 H 1.08995 * 109.47894 * 295.79177 * 1 2 3 20 20 H 1.09007 * 109.46985 * 55.79386 * 1 2 3 21 21 H 1.09004 * 109.47654 * 175.78933 * 1 2 3 22 22 H 1.09007 * 109.46104 * 305.85400 * 3 2 1 23 23 H 1.09003 * 109.46668 * 65.81695 * 3 2 1 24 24 H 1.09000 * 109.50237 * 60.75993 * 4 3 2 25 25 H 1.08992 * 109.50756 * 180.83772 * 4 3 2 26 26 H 1.08993 * 109.52748 * 177.55414 * 5 4 3 27 27 H 1.08997 * 109.52033 * 297.68435 * 5 4 3 28 28 H 0.97002 * 120.00095 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.47153 * 179.97438 * 17 16 2 30 30 H 1.09001 * 109.46832 * 59.98213 * 17 16 2 31 31 H 1.09004 * 109.47261 * 299.98194 * 17 16 2 32 32 H 1.09001 * 109.47159 * 300.02074 * 18 16 2 33 33 H 1.09001 * 109.47399 * 60.02271 * 18 16 2 34 34 H 1.09002 * 109.46996 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5181 1.3341 -0.1467 5 6 4.1188 0.5369 1.0145 6 6 3.5180 -0.8713 1.0208 7 1 3.7812 -1.3835 0.0954 8 6 4.0598 -1.6438 2.1959 9 1 3.3856 -2.0252 2.9485 10 6 5.4162 -1.8635 2.3102 11 7 6.2371 -1.3993 1.3936 12 14 6.0877 -2.8204 3.7671 13 1 6.1335 -4.2662 3.4312 14 1 7.4575 -2.3424 4.0843 15 1 5.2063 -2.6133 4.9442 16 6 1.9951 -0.7708 1.1338 17 6 1.6262 -0.0690 2.4424 18 6 1.3891 -2.1756 1.1203 19 1 -0.3635 0.4471 0.9252 20 1 -0.3633 0.5778 -0.8500 21 1 -0.3634 -1.0249 -0.0755 22 1 1.5634 1.9256 -0.8330 23 1 1.7324 1.8608 0.9375 24 1 3.7813 0.8566 -1.0905 25 1 3.9098 2.3511 -0.1317 26 1 5.1997 0.4712 0.8907 27 1 3.8896 1.0360 1.9560 28 1 7.1913 -1.5542 1.4738 29 1 2.0163 -0.6413 3.2841 30 1 0.5416 0.0023 2.5231 31 1 2.0579 0.9318 2.4521 32 1 0.3045 -2.1042 1.2011 33 1 1.6519 -2.6757 0.1881 34 1 1.7793 -2.7477 1.9621 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259480660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = -4.430542 kcal Electronic energy + Delta-G solvation = -13788.602034 eV Core-core repulsion = 11721.060516 eV Total energy + Delta-G solvation = -2067.541518 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.11909 -33.69712 -32.48694 -31.18838 -27.00451 -26.40716 -25.43894 -24.51554 -21.25467 -20.10662 -17.45157 -16.11468 -15.09455 -14.68645 -14.17146 -13.84710 -13.55187 -12.85795 -12.27399 -12.12753 -11.88576 -11.51137 -11.32813 -11.01738 -10.96929 -10.82009 -10.58633 -10.49060 -10.35529 -10.07312 -9.66125 -9.26609 -8.78259 -8.57651 -8.24429 -7.46217 -5.92381 -3.96815 3.32932 3.39977 3.42232 4.45115 4.72157 5.37336 5.63304 5.75053 5.79366 5.91350 5.99606 6.03926 6.23553 6.24159 6.29037 6.40365 6.44046 6.60714 6.73362 6.76838 6.85951 6.96620 7.03709 7.21403 7.35397 7.47284 7.80195 7.86420 7.97301 8.15606 8.23549 8.55538 9.05871 9.66256 11.13852 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046246 B = 0.013173 C = 0.011361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.307782 B = 2124.983608 C = 2463.947204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.534 5.534 3 C 0.059 3.941 4 C -0.118 4.118 5 C -0.113 4.113 6 C 0.069 3.931 7 H 0.032 0.968 8 C -0.505 4.505 9 H 0.057 0.943 10 C 0.061 3.939 11 N -0.890 5.890 12 Si 0.886 3.114 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.112 3.888 17 C -0.167 4.167 18 C -0.127 4.127 19 H 0.019 0.981 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.027 0.973 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.033 0.967 28 H 0.258 0.742 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.678 3.162 -0.895 8.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.069 4.069 4 C -0.156 4.156 5 C -0.151 4.151 6 C 0.050 3.950 7 H 0.050 0.950 8 C -0.544 4.544 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.529 5.529 12 Si 0.715 3.285 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.201 1.201 16 C 0.024 3.976 17 C -0.225 4.225 18 C -0.185 4.185 19 H 0.037 0.963 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.329 2.940 -1.376 8.015 hybrid contribution 0.131 -0.041 1.539 1.545 sum -7.198 2.899 0.163 7.762 Atomic orbital electron populations 1.22384 0.89690 1.01529 0.99162 1.62212 1.05740 1.13251 1.44583 1.22044 0.96754 0.89392 0.98706 1.21677 0.93443 0.99102 1.01370 1.21695 1.03148 0.96347 0.93887 1.18629 0.86092 0.92896 0.97365 0.94988 1.21210 0.91806 1.33596 1.07779 0.92491 1.24936 0.97195 0.95849 0.95995 1.69897 1.03088 1.45849 1.34034 0.86690 0.78288 0.80314 0.83250 1.20809 1.21401 1.20081 1.21200 0.98549 0.91679 0.86220 1.22378 0.98155 1.01516 1.00459 1.21812 0.97558 0.96696 1.02401 0.96272 0.92807 0.91547 0.92762 0.95475 0.92243 0.93722 0.89239 0.94823 0.93183 0.91334 0.95199 0.92856 0.94874 0.92842 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.78 60.06 0.53 0.86 16 2 N -0.53 -10.28 4.69 -227.21 -1.07 -11.35 16 3 C 0.06 1.08 5.17 -3.84 -0.02 1.06 16 4 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 5 C -0.11 -2.68 4.72 -26.62 -0.13 -2.81 16 6 C 0.07 1.71 1.57 -91.70 -0.14 1.57 16 7 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 8 C -0.51 -13.45 7.10 -34.44 -0.24 -13.70 16 9 H 0.06 1.49 5.68 -52.48 -0.30 1.20 16 10 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 11 N -0.89 -25.34 11.36 55.43 0.63 -24.71 16 12 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.11 2.35 0.44 -131.61 -0.06 2.29 16 17 C -0.17 -3.31 7.20 37.16 0.27 -3.04 16 18 C -0.13 -2.50 7.80 37.16 0.29 -2.21 16 19 H 0.02 0.30 6.46 -51.93 -0.34 -0.04 16 20 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 21 H 0.07 1.01 6.21 -51.93 -0.32 0.69 16 22 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 23 H 0.03 0.50 6.19 -51.93 -0.32 0.17 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 27 H 0.03 0.80 6.56 -51.93 -0.34 0.46 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.07 1.43 6.56 -51.93 -0.34 1.09 16 30 H 0.03 0.52 6.54 -51.93 -0.34 0.18 16 31 H 0.05 1.07 4.80 -51.93 -0.25 0.82 16 32 H 0.03 0.56 6.32 -51.93 -0.33 0.23 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.36 6.68 -51.93 -0.35 1.01 16 LS Contribution 246.32 15.07 3.71 3.71 Total: -1.00 -27.58 246.32 -6.72 -34.30 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.21 Total: -1.17 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 0.24 Total: -16.95 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.44 Total: -36.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.58 -6.72 -34.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259480660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.873 kcal (2) G-P(sol) polarization free energy of solvation -27.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds