Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46837 * 111.00400 * 2 1 4 4 C 1.53033 * 109.52869 * 185.83699 * 3 2 1 5 5 C 1.53125 * 109.28004 * 300.82084 * 4 3 2 6 6 C 1.53096 * 109.15121 * 57.65006 * 5 4 3 7 7 H 1.08999 * 109.51104 * 62.29172 * 6 5 4 8 8 C 1.50703 * 109.48980 * 182.40033 * 6 5 4 9 9 H 1.08003 * 119.99796 * 119.80767 * 8 6 5 10 10 C 1.37876 * 120.00009 * 299.81608 * 8 6 5 11 11 N 1.31514 * 120.00002 * 359.97438 * 10 8 6 12 12 Si 1.86794 * 119.99900 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47530 * 89.99874 * 12 10 8 14 14 H 1.48503 * 109.46945 * 209.99676 * 12 10 8 15 15 H 1.48501 * 109.47319 * 329.99339 * 12 10 8 16 16 C 1.46855 * 110.99563 * 124.20977 * 2 1 3 17 17 C 1.52997 * 109.46173 * 294.17380 * 16 2 1 18 18 C 1.52997 * 109.46323 * 54.15659 * 16 2 1 19 19 H 1.08995 * 109.47894 * 295.79177 * 1 2 3 20 20 H 1.09007 * 109.46985 * 55.79386 * 1 2 3 21 21 H 1.09004 * 109.47654 * 175.78933 * 1 2 3 22 22 H 1.09007 * 109.46104 * 305.85400 * 3 2 1 23 23 H 1.09003 * 109.46668 * 65.81695 * 3 2 1 24 24 H 1.09000 * 109.50237 * 60.75993 * 4 3 2 25 25 H 1.08992 * 109.50756 * 180.83772 * 4 3 2 26 26 H 1.08993 * 109.52748 * 177.55414 * 5 4 3 27 27 H 1.08997 * 109.52033 * 297.68435 * 5 4 3 28 28 H 0.97002 * 120.00095 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.47153 * 179.97438 * 17 16 2 30 30 H 1.09001 * 109.46832 * 59.98213 * 17 16 2 31 31 H 1.09004 * 109.47261 * 299.98194 * 17 16 2 32 32 H 1.09001 * 109.47159 * 300.02074 * 18 16 2 33 33 H 1.09001 * 109.47399 * 60.02271 * 18 16 2 34 34 H 1.09002 * 109.46996 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5181 1.3341 -0.1467 5 6 4.1188 0.5369 1.0145 6 6 3.5180 -0.8713 1.0208 7 1 3.7812 -1.3835 0.0954 8 6 4.0598 -1.6438 2.1959 9 1 3.3856 -2.0252 2.9485 10 6 5.4162 -1.8635 2.3102 11 7 6.2371 -1.3993 1.3936 12 14 6.0877 -2.8204 3.7671 13 1 6.1335 -4.2662 3.4312 14 1 7.4575 -2.3424 4.0843 15 1 5.2063 -2.6133 4.9442 16 6 1.9951 -0.7708 1.1338 17 6 1.6262 -0.0690 2.4424 18 6 1.3891 -2.1756 1.1203 19 1 -0.3635 0.4471 0.9252 20 1 -0.3633 0.5778 -0.8500 21 1 -0.3634 -1.0249 -0.0755 22 1 1.5634 1.9256 -0.8330 23 1 1.7324 1.8608 0.9375 24 1 3.7813 0.8566 -1.0905 25 1 3.9098 2.3511 -0.1317 26 1 5.1997 0.4712 0.8907 27 1 3.8896 1.0360 1.9560 28 1 7.1913 -1.5542 1.4738 29 1 2.0163 -0.6413 3.2841 30 1 0.5416 0.0023 2.5231 31 1 2.0579 0.9318 2.4521 32 1 0.3045 -2.1042 1.2011 33 1 1.6519 -2.6757 0.1881 34 1 1.7793 -2.7477 1.9621 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259480660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = -21.643652 kcal Electronic energy + Delta-G solvation = -13789.348450 eV Core-core repulsion = 11721.060516 eV Total energy + Delta-G solvation = -2068.287935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.74163 -35.55832 -34.12057 -33.03538 -28.72868 -28.03562 -27.00819 -26.28903 -22.99830 -21.80025 -19.16175 -18.11011 -16.86639 -16.30755 -15.87814 -15.47059 -15.05735 -14.59489 -14.08085 -13.77791 -13.41847 -13.11384 -12.95819 -12.84540 -12.62078 -12.54266 -12.26531 -12.16711 -12.04141 -11.80330 -11.49689 -11.12292 -10.62168 -10.43226 -10.30347 -8.93247 -8.01614 -6.12442 1.41972 1.43183 1.52075 2.46180 3.24473 3.26155 4.16815 4.21950 4.30940 4.35997 4.54525 4.62126 4.71134 4.76367 4.85428 4.90689 4.98478 5.04512 5.08003 5.14681 5.18185 5.37583 5.37939 5.53259 5.56915 5.59429 5.72297 6.05847 6.22137 6.32033 6.51512 6.60180 6.99660 7.53827 9.03524 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046246 B = 0.013173 C = 0.011361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.307782 B = 2124.983608 C = 2463.947204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.551 5.551 3 C 0.062 3.938 4 C -0.113 4.113 5 C -0.107 4.107 6 C 0.069 3.931 7 H -0.014 1.014 8 C -0.512 4.512 9 H 0.059 0.941 10 C 0.009 3.991 11 N -0.920 5.920 12 Si 0.947 3.053 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.267 1.267 16 C 0.113 3.887 17 C -0.158 4.158 18 C -0.122 4.122 19 H 0.028 0.972 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.029 0.971 28 H 0.257 0.743 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 3.714 -0.473 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.275 5.275 3 C -0.065 4.065 4 C -0.151 4.151 5 C -0.145 4.145 6 C 0.050 3.950 7 H 0.004 0.996 8 C -0.551 4.551 9 H 0.077 0.923 10 C -0.188 4.188 11 N -0.561 5.561 12 Si 0.773 3.227 13 H -0.205 1.205 14 H -0.214 1.214 15 H -0.192 1.192 16 C 0.024 3.976 17 C -0.216 4.216 18 C -0.180 4.180 19 H 0.046 0.954 20 H 0.094 0.906 21 H 0.090 0.910 22 H 0.102 0.898 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.264 3.492 -0.952 9.946 hybrid contribution 0.717 -0.207 1.361 1.552 sum -8.547 3.286 0.409 9.166 Atomic orbital electron populations 1.22462 0.87064 1.02519 1.00603 1.62137 1.08120 1.13595 1.43665 1.22041 0.94935 0.89355 1.00203 1.21602 0.95355 0.99383 0.98782 1.21513 1.01106 0.96619 0.95305 1.18528 0.89459 0.92611 0.94409 0.99562 1.21547 0.91998 1.33331 1.08230 0.92304 1.25697 0.97727 0.96965 0.98447 1.70055 1.03106 1.47148 1.35753 0.85730 0.77545 0.78945 0.80471 1.20475 1.21417 1.19159 1.20997 0.95826 0.93023 0.87709 1.22261 0.99785 1.00614 0.98965 1.21747 0.99438 0.95651 1.01153 0.95365 0.90593 0.90991 0.89830 0.94889 0.93641 0.91557 0.92847 0.95236 0.93435 0.92963 0.92455 0.93374 0.91701 0.94032 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 8.78 127.69 1.12 1.71 16 2 N -0.55 -19.92 4.69 -872.75 -4.10 -24.01 16 3 C 0.06 2.12 5.17 86.33 0.45 2.56 16 4 C -0.11 -4.48 6.09 30.65 0.19 -4.29 16 5 C -0.11 -5.20 4.72 30.67 0.14 -5.05 16 6 C 0.07 3.48 1.57 -11.49 -0.02 3.46 16 7 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 8 C -0.51 -27.76 7.10 25.60 0.18 -27.58 16 9 H 0.06 3.10 5.68 -2.91 -0.02 3.08 16 10 C 0.01 0.52 5.30 84.65 0.45 0.97 16 11 N -0.92 -54.16 11.36 21.45 0.24 -53.92 16 12 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 14 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 C 0.11 4.63 0.44 3.55 0.00 4.63 16 17 C -0.16 -5.94 7.20 71.98 0.52 -5.43 16 18 C -0.12 -4.66 7.80 71.98 0.56 -4.10 16 19 H 0.03 0.74 6.46 -2.39 -0.02 0.73 16 20 H 0.08 1.80 8.09 -2.38 -0.02 1.78 16 21 H 0.07 1.91 6.21 -2.39 -0.01 1.90 16 22 H 0.08 2.38 8.09 -2.38 -0.02 2.36 16 23 H 0.03 1.10 6.19 -2.39 -0.01 1.08 16 24 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 2.96 6.16 -2.39 -0.01 2.94 16 27 H 0.03 1.41 6.56 -2.39 -0.02 1.39 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.05 2.12 6.56 -2.39 -0.02 2.10 16 30 H 0.06 1.83 6.54 -2.39 -0.02 1.81 16 31 H 0.05 1.84 4.80 -2.38 -0.01 1.83 16 32 H 0.06 2.02 6.32 -2.39 -0.02 2.01 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 2.11 6.68 -2.39 -0.02 2.09 16 Total: -1.00 -59.97 246.32 2.83 -57.14 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.07 Total: 7.90 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 3.59 Total: -33.12 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -3.85 Total: -77.93 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -59.97 2.83 -57.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259480660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.492 kcal (2) G-P(sol) polarization free energy of solvation -59.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds