Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99934 * 2 1 4 4 H 1.48505 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47284 * 300.00124 * 3 2 1 6 6 H 1.48502 * 109.47293 * 60.00499 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99453 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46988 * 179.97438 * 9 7 2 11 11 H 1.08995 * 108.87498 * 56.39451 * 10 9 7 12 12 C 1.54236 * 108.89247 * 297.88348 * 10 9 7 13 13 C 1.50473 * 108.51943 * 159.25374 * 12 10 9 14 14 C 1.54076 * 112.49469 * 94.15360 * 13 12 10 15 15 C 1.54061 * 112.81691 * 318.28258 * 14 13 12 16 16 C 1.50476 * 112.50196 * 318.28597 * 15 14 13 17 17 H 1.08999 * 109.62377 * 334.43918 * 16 15 14 18 18 N 1.46894 * 109.62909 * 213.85966 * 16 15 14 19 19 C 1.45546 * 108.89126 * 174.99725 * 10 9 7 20 20 H 0.96999 * 120.00023 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47533 * 59.99601 * 9 7 2 22 22 H 1.08999 * 109.46981 * 299.99488 * 9 7 2 23 23 H 1.08999 * 109.62981 * 278.96179 * 12 10 9 24 24 H 1.08993 * 109.63267 * 39.34938 * 12 10 9 25 25 H 1.08998 * 108.87927 * 214.92911 * 13 12 10 26 26 H 1.08998 * 108.88053 * 333.47734 * 13 12 10 27 27 H 1.08997 * 108.81307 * 79.14617 * 14 13 12 28 28 H 1.08999 * 108.81277 * 197.42244 * 14 13 12 29 29 H 1.09003 * 108.87693 * 79.06319 * 15 14 13 30 30 H 1.09003 * 108.87888 * 197.60334 * 15 14 13 31 31 H 1.00901 * 111.00166 * 60.96061 * 18 16 15 32 32 H 1.00899 * 111.00084 * 184.91806 * 18 16 15 33 33 H 1.08995 * 108.89611 * 303.44165 * 19 10 9 34 34 H 1.08994 * 108.89692 * 61.93829 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9082 -3.5591 0.8595 12 6 3.0885 -3.5982 -1.2893 13 6 4.3561 -4.3789 -1.0708 14 6 4.2424 -5.8361 -1.5581 15 6 2.8911 -6.4826 -1.1984 16 6 2.4409 -6.1384 0.1955 17 1 3.3079 -5.9023 0.8124 18 7 1.7137 -7.2760 0.7743 19 6 1.5088 -4.9117 0.1206 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.5275 -4.0347 -2.1156 24 1 3.3293 -2.5601 -1.5184 25 1 5.1687 -3.8898 -1.6080 26 1 4.5894 -4.3818 -0.0060 27 1 4.3640 -5.8550 -2.6411 28 1 5.0434 -6.4213 -1.1064 29 1 2.1368 -6.1406 -1.9071 30 1 2.9854 -7.5655 -1.2797 31 1 2.3053 -8.0913 0.8329 32 1 1.3331 -7.0397 1.6783 33 1 0.8985 -4.8764 1.0230 34 1 0.8527 -5.0192 -0.7431 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259515075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = -34.466066 kcal Electronic energy + Delta-G solvation = -13086.234587 eV Core-core repulsion = 11017.390630 eV Total energy + Delta-G solvation = -2068.843956 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.86632 -34.38391 -33.23522 -31.91437 -28.89548 -27.37660 -24.21706 -23.62790 -21.12205 -19.39876 -18.73876 -16.28626 -15.42457 -15.23525 -14.53736 -14.38468 -14.13116 -13.03924 -12.93460 -12.40671 -12.11237 -11.91481 -11.54344 -11.17453 -10.94272 -10.73194 -10.61132 -10.24365 -10.10649 -10.00755 -9.75049 -9.45632 -8.94898 -8.89427 -8.45038 -8.30009 -5.94969 -3.95853 3.32926 3.40611 3.44293 4.48975 4.67531 5.10973 5.12200 5.39539 5.41947 5.56852 5.64519 5.70722 5.89008 6.01070 6.11898 6.13370 6.38130 6.44884 6.48608 6.60357 6.72564 6.84624 6.86821 7.17107 7.21565 7.31708 7.42157 7.61399 7.74591 7.89639 8.06184 8.50134 9.11060 9.67225 11.16499 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051345 B = 0.008983 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.198715 B = 3116.331805 C = 3490.086448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.083 4.083 11 H 0.050 0.950 12 C -0.107 4.107 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.108 4.108 16 C 0.091 3.909 17 H 0.034 0.966 18 N -0.849 5.849 19 C -0.097 4.097 20 H 0.258 0.742 21 H 0.015 0.985 22 H 0.013 0.987 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.332 0.668 32 H 0.339 0.661 33 H 0.053 0.947 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -11.184 -0.653 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.102 4.102 11 H 0.068 0.932 12 C -0.144 4.144 13 C -0.156 4.156 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.020 4.020 17 H 0.052 0.948 18 N -0.379 5.379 19 C -0.135 4.135 20 H 0.068 0.932 21 H 0.034 0.966 22 H 0.031 0.969 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.071 0.929 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.914 -10.996 -1.292 12.552 hybrid contribution 1.108 1.020 0.800 1.705 sum 7.022 -9.977 -0.491 12.210 Atomic orbital electron populations 1.69980 1.06018 1.26294 1.51313 1.25035 0.94803 0.99141 0.95645 0.86605 0.80149 0.84156 0.77509 1.19789 1.21109 1.21140 1.21315 0.93021 0.90971 1.49704 0.92488 1.19204 0.93637 0.91251 0.97032 1.20078 0.98271 0.95187 0.96650 0.93165 1.21352 0.94659 1.00675 0.97735 1.21407 0.99000 0.94316 1.00832 1.21906 0.96523 0.96384 1.00376 1.21323 0.97171 0.99367 0.96730 1.21155 0.94836 0.90941 0.95071 0.94802 1.58833 1.41455 1.06989 1.30586 1.20561 0.97706 0.93224 1.01965 0.93190 0.96628 0.96885 0.93004 0.90277 0.93121 0.92648 0.92590 0.93301 0.91561 0.92721 0.85575 0.84857 0.92875 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.37 8.07 -34.44 -0.28 -14.65 16 8 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 9 C 0.03 0.67 4.38 -27.88 -0.12 0.55 16 10 C -0.08 -1.70 1.68 -93.49 -0.16 -1.86 16 11 H 0.05 1.06 7.46 -51.93 -0.39 0.67 16 12 C -0.11 -2.02 4.87 -27.35 -0.13 -2.15 16 13 C -0.12 -1.84 5.32 -27.43 -0.15 -1.99 16 14 C -0.11 -1.52 5.85 -25.62 -0.15 -1.67 16 15 C -0.11 -1.51 5.04 -27.44 -0.14 -1.65 16 16 C 0.09 1.34 2.93 -68.32 -0.20 1.14 16 17 H 0.03 0.51 6.97 -51.93 -0.36 0.15 16 18 N -0.85 -10.96 9.17 -5.19 -0.05 -11.00 16 19 C -0.10 -1.75 4.07 -29.59 -0.12 -1.87 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.01 0.36 8.07 -51.93 -0.42 -0.06 16 23 H 0.05 0.95 6.98 -51.93 -0.36 0.59 16 24 H 0.08 1.68 6.40 -51.93 -0.33 1.34 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.88 6.62 -51.93 -0.34 0.54 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.01 6.63 -51.93 -0.34 0.66 16 30 H 0.05 0.69 7.81 -51.93 -0.41 0.29 16 31 H 0.33 3.56 8.89 -39.29 -0.35 3.21 16 32 H 0.34 4.08 8.87 -39.29 -0.35 3.73 16 33 H 0.05 0.98 7.87 -51.93 -0.41 0.57 16 34 H 0.06 1.13 7.47 -51.93 -0.39 0.74 16 LS Contribution 258.96 15.07 3.90 3.90 Total: -1.00 -29.63 258.96 -7.62 -37.25 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.65 Total: 2.22 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -1.54 Total: -22.68 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.69 Total: -37.47 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.63 -7.62 -37.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259515075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.785 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds