Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99934 * 2 1 4 4 H 1.48505 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47284 * 300.00124 * 3 2 1 6 6 H 1.48502 * 109.47293 * 60.00499 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99453 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46988 * 179.97438 * 9 7 2 11 11 H 1.08995 * 108.87498 * 56.39451 * 10 9 7 12 12 C 1.54236 * 108.89247 * 297.88348 * 10 9 7 13 13 C 1.50473 * 108.51943 * 159.25374 * 12 10 9 14 14 C 1.54076 * 112.49469 * 94.15360 * 13 12 10 15 15 C 1.54061 * 112.81691 * 318.28258 * 14 13 12 16 16 C 1.50476 * 112.50196 * 318.28597 * 15 14 13 17 17 H 1.08999 * 109.62377 * 334.43918 * 16 15 14 18 18 N 1.46894 * 109.62909 * 213.85966 * 16 15 14 19 19 C 1.45546 * 108.89126 * 174.99725 * 10 9 7 20 20 H 0.96999 * 120.00023 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.47533 * 59.99601 * 9 7 2 22 22 H 1.08999 * 109.46981 * 299.99488 * 9 7 2 23 23 H 1.08999 * 109.62981 * 278.96179 * 12 10 9 24 24 H 1.08993 * 109.63267 * 39.34938 * 12 10 9 25 25 H 1.08998 * 108.87927 * 214.92911 * 13 12 10 26 26 H 1.08998 * 108.88053 * 333.47734 * 13 12 10 27 27 H 1.08997 * 108.81307 * 79.14617 * 14 13 12 28 28 H 1.08999 * 108.81277 * 197.42244 * 14 13 12 29 29 H 1.09003 * 108.87693 * 79.06319 * 15 14 13 30 30 H 1.09003 * 108.87888 * 197.60334 * 15 14 13 31 31 H 1.00901 * 111.00166 * 60.96061 * 18 16 15 32 32 H 1.00899 * 111.00084 * 184.91806 * 18 16 15 33 33 H 1.08995 * 108.89611 * 303.44165 * 19 10 9 34 34 H 1.08994 * 108.89692 * 61.93829 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9082 -3.5591 0.8595 12 6 3.0885 -3.5982 -1.2893 13 6 4.3561 -4.3789 -1.0708 14 6 4.2424 -5.8361 -1.5581 15 6 2.8911 -6.4826 -1.1984 16 6 2.4409 -6.1384 0.1955 17 1 3.3079 -5.9023 0.8124 18 7 1.7137 -7.2760 0.7743 19 6 1.5088 -4.9117 0.1206 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.5275 -4.0347 -2.1156 24 1 3.3293 -2.5601 -1.5184 25 1 5.1687 -3.8898 -1.6080 26 1 4.5894 -4.3818 -0.0060 27 1 4.3640 -5.8550 -2.6411 28 1 5.0434 -6.4213 -1.1064 29 1 2.1368 -6.1406 -1.9071 30 1 2.9854 -7.5655 -1.2797 31 1 2.3053 -8.0913 0.8329 32 1 1.3331 -7.0397 1.6783 33 1 0.8985 -4.8764 1.0230 34 1 0.8527 -5.0192 -0.7431 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259515075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = -53.777647 kcal Electronic energy + Delta-G solvation = -13087.072000 eV Core-core repulsion = 11017.390630 eV Total energy + Delta-G solvation = -2069.681369 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.27396 -36.01606 -34.67221 -33.76855 -30.12110 -29.32919 -25.63828 -25.37226 -22.70650 -21.00485 -19.99649 -18.43082 -16.77716 -16.59374 -16.26146 -15.81746 -15.44158 -14.66772 -14.33365 -14.01086 -13.75610 -13.59921 -13.00930 -12.85624 -12.64624 -12.54835 -12.11404 -12.04116 -11.59037 -11.36318 -11.20798 -11.08873 -10.87949 -10.71957 -10.52535 -9.52101 -8.17528 -6.26677 1.39023 1.39242 1.52398 2.41491 3.15394 3.55243 3.82968 3.90689 4.22325 4.31612 4.37407 4.39399 4.57761 4.62954 4.66174 4.98008 5.08909 5.13164 5.22064 5.28171 5.30553 5.35012 5.44784 5.46360 5.53852 5.66056 5.67232 5.84421 5.91327 6.29953 6.33481 6.69385 6.89681 7.41361 8.94876 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051345 B = 0.008983 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.198715 B = 3116.331805 C = 3490.086448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.030 3.970 10 C -0.070 4.070 11 H 0.047 0.953 12 C -0.101 4.101 13 C -0.115 4.115 14 C -0.108 4.108 15 C -0.108 4.108 16 C 0.102 3.898 17 H 0.038 0.962 18 N -0.851 5.851 19 C -0.094 4.094 20 H 0.261 0.739 21 H -0.014 1.014 22 H -0.018 1.018 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.350 0.650 32 H 0.344 0.656 33 H 0.042 0.958 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 -12.106 -0.797 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.563 4.563 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.089 4.089 11 H 0.065 0.935 12 C -0.138 4.138 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.146 4.146 16 C -0.009 4.009 17 H 0.056 0.944 18 N -0.383 5.383 19 C -0.132 4.132 20 H 0.070 0.930 21 H 0.004 0.996 22 H 0.000 1.000 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.061 0.939 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.981 -11.943 -1.432 14.435 hybrid contribution 0.398 1.294 0.858 1.603 sum 8.378 -10.649 -0.574 13.562 Atomic orbital electron populations 1.70121 1.07843 1.27455 1.52366 1.25994 0.95718 1.03324 0.95186 0.85449 0.79216 0.79067 0.77645 1.18419 1.20536 1.20579 1.21687 0.93461 0.91955 1.49229 0.91888 1.19127 0.94070 0.93478 0.94043 1.19922 0.97102 0.94175 0.97660 0.93452 1.21238 0.96235 0.99802 0.96559 1.21334 0.97058 0.95675 1.01136 1.21870 0.96796 0.94660 1.01288 1.21317 0.97110 1.00729 0.95406 1.20936 0.93846 0.89934 0.96158 0.94431 1.58747 1.41634 1.06905 1.31031 1.20462 0.97928 0.94013 1.00807 0.92994 0.99607 0.99960 0.92957 0.93005 0.91862 0.92774 0.91432 0.90923 0.93206 0.90620 0.83621 0.84305 0.93919 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.42 13.29 21.45 0.28 -58.14 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 3 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.53 -30.17 8.07 25.60 0.21 -29.96 16 8 H 0.06 3.47 7.06 -2.91 -0.02 3.45 16 9 C 0.03 1.62 4.38 29.85 0.13 1.75 16 10 C -0.07 -2.92 1.68 -12.65 -0.02 -2.94 16 11 H 0.05 2.00 7.46 -2.39 -0.02 1.98 16 12 C -0.10 -3.79 4.87 30.20 0.15 -3.64 16 13 C -0.11 -3.32 5.32 30.14 0.16 -3.16 16 14 C -0.11 -2.52 5.85 31.32 0.18 -2.34 16 15 C -0.11 -2.72 5.04 30.14 0.15 -2.57 16 16 C 0.10 2.84 2.93 44.52 0.13 2.97 16 17 H 0.04 1.04 6.97 -2.39 -0.02 1.02 16 18 N -0.85 -20.08 9.17 -170.33 -1.56 -21.64 16 19 C -0.09 -3.43 4.07 28.74 0.12 -3.31 16 20 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 21 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 22 H -0.02 -1.07 8.07 -2.39 -0.02 -1.09 16 23 H 0.05 1.93 6.98 -2.39 -0.02 1.91 16 24 H 0.05 2.21 6.40 -2.39 -0.02 2.20 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.59 6.62 -2.39 -0.02 1.57 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.43 6.63 -2.39 -0.02 1.42 16 30 H 0.08 1.63 7.81 -2.39 -0.02 1.61 16 31 H 0.35 6.37 8.89 -89.69 -0.80 5.57 16 32 H 0.34 7.69 8.87 -89.69 -0.80 6.89 16 33 H 0.04 1.61 7.87 -2.39 -0.02 1.59 16 34 H 0.05 1.78 7.47 -2.39 -0.02 1.76 16 Total: -1.00 -64.70 258.96 1.90 -62.80 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -0.51 Total: 12.98 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 1.67 Total: -43.04 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -1.28 Total: -79.78 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.70 1.90 -62.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259515075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.023 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds