Wall clock time and date at job start Mon Mar 30 2020 02:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 C 1.53002 * 109.46795 * 119.99749 * 2 1 3 5 5 H 1.09009 * 109.46156 * 60.02247 * 4 2 1 6 6 C 1.53032 * 109.46169 * 179.97438 * 4 2 1 7 7 C 1.53118 * 109.27957 * 179.18619 * 6 4 2 8 8 H 1.09001 * 109.52874 * 182.37802 * 7 6 4 9 9 C 1.50702 * 109.52167 * 62.25026 * 7 6 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 7 6 11 11 C 1.37884 * 119.99942 * 179.72173 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.53123 * 109.16101 * 302.34842 * 7 6 4 18 18 C 1.53038 * 109.27646 * 57.65182 * 17 7 6 19 19 N 1.46842 * 109.52544 * 300.82147 * 18 17 7 20 20 H 1.09001 * 109.46994 * 300.00748 * 1 2 3 21 21 H 1.08999 * 109.46701 * 59.99757 * 1 2 3 22 22 H 1.08992 * 109.47476 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47031 * 239.99807 * 2 1 3 24 24 H 1.09006 * 109.47026 * 299.99785 * 3 2 1 25 25 H 1.09000 * 109.47218 * 59.99922 * 3 2 1 26 26 H 1.09000 * 109.47022 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.50397 * 59.24827 * 6 4 2 28 28 H 1.09006 * 109.50667 * 299.12947 * 6 4 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.50111 * 177.59666 * 17 7 6 31 31 H 1.08999 * 109.50106 * 297.71178 * 17 7 6 32 32 H 1.09002 * 109.45705 * 180.80489 * 18 17 7 33 33 H 1.09001 * 109.46298 * 60.83824 * 18 17 7 34 34 H 1.00899 * 111.00076 * 185.84502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6768 -1.7490 1.2490 6 6 3.5703 -0.7217 1.2488 7 6 4.0760 -1.4264 2.5106 8 1 5.1652 -1.3920 2.5355 9 6 3.6176 -2.8620 2.5037 10 1 3.0250 -3.2357 1.6817 11 6 3.9600 -3.7001 3.5437 12 7 4.6819 -3.2451 4.5444 13 14 3.3982 -5.4815 3.5313 14 1 4.4188 -6.3177 2.8499 15 1 3.2227 -5.9549 4.9279 16 1 2.1066 -5.5883 2.8065 17 6 3.5121 -0.7152 3.7438 18 6 1.9834 -0.7149 3.6719 19 7 1.5497 -0.0290 2.4480 20 1 -0.3633 0.5140 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.6768 1.9563 -0.8901 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4424 0.0005 27 1 3.9345 0.3055 1.2351 28 1 3.9339 -1.2492 0.3669 29 1 4.9224 -3.8346 5.2763 30 1 3.8340 -1.2380 4.6444 31 1 3.8754 0.3122 3.7692 32 1 1.5791 -0.1966 4.5414 33 1 1.6202 -1.7426 3.6604 34 1 0.5457 0.0681 2.4243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259564994.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:58 Heat of formation + Delta-G solvation = -23.845884 kcal Electronic energy + Delta-G solvation = -13499.110286 eV Core-core repulsion = 11430.726856 eV Total energy + Delta-G solvation = -2068.383431 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.43421 -34.62957 -32.41609 -30.52860 -28.53003 -26.81925 -25.05605 -22.89548 -21.74471 -19.27812 -18.26300 -15.76776 -15.51580 -14.68889 -14.53660 -13.60750 -13.28981 -12.91223 -12.44851 -12.41960 -11.92390 -11.76492 -11.48007 -11.24034 -10.91874 -10.82401 -10.56481 -10.34589 -10.21202 -9.93827 -9.69305 -9.13421 -8.89706 -8.70117 -8.25797 -7.43581 -5.94613 -3.99218 3.29956 3.37131 3.39581 4.45500 5.06807 5.32532 5.37744 5.40437 5.47142 5.95011 6.08635 6.14092 6.19123 6.27575 6.33059 6.43218 6.52172 6.56138 6.69831 6.77965 6.86320 6.87961 7.11441 7.16243 7.34224 7.59786 7.72220 7.84033 8.00688 8.26414 8.32146 8.52784 9.03827 9.63872 11.11129 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045256 B = 0.011471 C = 0.010662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.551546 B = 2440.457514 C = 2625.613934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.135 4.135 4 C 0.103 3.897 5 H 0.042 0.958 6 C -0.099 4.099 7 C 0.042 3.958 8 H 0.023 0.977 9 C -0.504 4.504 10 H 0.052 0.948 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.884 3.116 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.104 4.104 18 C 0.072 3.928 19 N -0.685 5.685 20 H 0.056 0.944 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.258 0.742 30 H 0.090 0.910 31 H 0.021 0.979 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 5.488 -5.333 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.193 4.193 4 C -0.007 4.007 5 H 0.060 0.940 6 C -0.137 4.137 7 C 0.023 3.977 8 H 0.041 0.959 9 C -0.542 4.542 10 H 0.070 0.930 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.713 3.287 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.142 4.142 18 C -0.056 4.056 19 N -0.317 5.317 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.576 5.865 -5.142 9.588 hybrid contribution -0.891 -1.909 0.067 2.108 sum -6.467 3.956 -5.074 9.122 Atomic orbital electron populations 1.21853 0.96356 1.01067 1.01209 1.21232 0.94785 0.97066 0.98258 1.21733 1.01120 0.95730 1.00678 1.21366 0.96441 0.94685 0.88170 0.94029 1.21656 0.93370 0.98876 0.99774 1.18729 0.95680 0.93557 0.89714 0.95855 1.21187 1.32644 0.94915 1.05462 0.93025 1.24949 0.95260 0.98012 0.95783 1.69877 1.38028 1.35188 1.09833 0.86721 0.79015 0.85912 0.77095 1.20784 1.21326 1.20171 1.21531 0.92453 0.96998 1.03228 1.21799 0.98331 0.95863 0.89621 1.60482 1.14912 1.53729 1.02544 0.92471 0.93368 0.93287 0.91835 0.94566 0.91730 0.92669 0.93630 0.93715 0.93161 0.89165 0.95996 0.93881 0.94584 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.87 37.16 0.33 -1.66 16 2 C -0.09 -1.48 2.80 -90.62 -0.25 -1.74 16 3 C -0.14 -2.00 8.69 37.16 0.32 -1.67 16 4 C 0.10 1.99 2.04 -67.73 -0.14 1.85 16 5 H 0.04 0.91 6.78 -51.92 -0.35 0.56 16 6 C -0.10 -2.12 4.50 -26.65 -0.12 -2.24 16 7 C 0.04 1.05 2.60 -91.65 -0.24 0.82 16 8 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 9 C -0.50 -13.68 6.73 -34.44 -0.23 -13.91 16 10 H 0.05 1.41 6.86 -52.49 -0.36 1.05 16 11 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 12 N -0.89 -25.44 11.34 55.43 0.63 -24.82 16 13 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.10 -2.51 5.42 -26.65 -0.14 -2.66 16 18 C 0.07 1.56 6.34 -3.84 -0.02 1.54 16 19 N -0.68 -12.96 5.72 -106.76 -0.61 -13.57 16 20 H 0.06 0.75 6.53 -51.93 -0.34 0.41 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.99 7.60 -51.93 -0.39 0.59 16 26 H 0.05 0.85 6.41 -51.93 -0.33 0.52 16 27 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.85 7.31 -51.93 -0.38 0.47 16 34 H 0.32 5.36 6.78 -39.29 -0.27 5.09 16 LS Contribution 255.37 15.07 3.85 3.85 Total: -1.00 -27.69 255.37 -7.34 -35.02 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.59 Total: 1.24 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -0.59 Total: -18.10 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.02 Total: -38.38 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.69 -7.34 -35.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259564994.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.176 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds