Wall clock time and date at job start Mon Mar 30 2020 02:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 C 1.53002 * 109.46795 * 119.99749 * 2 1 3 5 5 H 1.09009 * 109.46156 * 60.02247 * 4 2 1 6 6 C 1.53032 * 109.46169 * 179.97438 * 4 2 1 7 7 C 1.53118 * 109.27957 * 179.18619 * 6 4 2 8 8 H 1.09001 * 109.52874 * 182.37802 * 7 6 4 9 9 C 1.50702 * 109.52167 * 62.25026 * 7 6 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 7 6 11 11 C 1.37884 * 119.99942 * 179.72173 * 9 7 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 7 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 7 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.53123 * 109.16101 * 302.34842 * 7 6 4 18 18 C 1.53038 * 109.27646 * 57.65182 * 17 7 6 19 19 N 1.46842 * 109.52544 * 300.82147 * 18 17 7 20 20 H 1.09001 * 109.46994 * 300.00748 * 1 2 3 21 21 H 1.08999 * 109.46701 * 59.99757 * 1 2 3 22 22 H 1.08992 * 109.47476 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47031 * 239.99807 * 2 1 3 24 24 H 1.09006 * 109.47026 * 299.99785 * 3 2 1 25 25 H 1.09000 * 109.47218 * 59.99922 * 3 2 1 26 26 H 1.09000 * 109.47022 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.50397 * 59.24827 * 6 4 2 28 28 H 1.09006 * 109.50667 * 299.12947 * 6 4 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.50111 * 177.59666 * 17 7 6 31 31 H 1.08999 * 109.50106 * 297.71178 * 17 7 6 32 32 H 1.09002 * 109.45705 * 180.80489 * 18 17 7 33 33 H 1.09001 * 109.46298 * 60.83824 * 18 17 7 34 34 H 1.00899 * 111.00076 * 185.84502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6768 -1.7490 1.2490 6 6 3.5703 -0.7217 1.2488 7 6 4.0760 -1.4264 2.5106 8 1 5.1652 -1.3920 2.5355 9 6 3.6176 -2.8620 2.5037 10 1 3.0250 -3.2357 1.6817 11 6 3.9600 -3.7001 3.5437 12 7 4.6819 -3.2451 4.5444 13 14 3.3982 -5.4815 3.5313 14 1 4.4188 -6.3177 2.8499 15 1 3.2227 -5.9549 4.9279 16 1 2.1066 -5.5883 2.8065 17 6 3.5121 -0.7152 3.7438 18 6 1.9834 -0.7149 3.6719 19 7 1.5497 -0.0290 2.4480 20 1 -0.3633 0.5140 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.6768 1.9563 -0.8901 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4424 0.0005 27 1 3.9345 0.3055 1.2351 28 1 3.9339 -1.2492 0.3669 29 1 4.9224 -3.8346 5.2763 30 1 3.8340 -1.2380 4.6444 31 1 3.8754 0.3122 3.7692 32 1 1.5791 -0.1966 4.5414 33 1 1.6202 -1.7426 3.6604 34 1 0.5457 0.0681 2.4243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259564994.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:58 Heat of formation + Delta-G solvation = -40.600427 kcal Electronic energy + Delta-G solvation = -13499.836818 eV Core-core repulsion = 11430.726856 eV Total energy + Delta-G solvation = -2069.109962 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.07777 -36.25583 -34.26189 -32.41172 -30.17503 -28.04497 -27.03776 -24.51427 -23.51925 -20.91429 -19.99088 -17.74765 -17.19941 -16.54660 -16.09074 -15.11172 -14.94133 -14.65880 -14.13967 -13.89857 -13.64601 -13.17632 -13.11406 -12.84773 -12.75376 -12.41789 -12.30124 -11.91747 -11.73080 -11.54746 -11.39821 -11.00223 -10.79433 -10.61833 -10.31092 -9.09947 -8.07040 -6.18245 1.37053 1.38529 1.47335 2.41804 3.20142 3.50889 4.06165 4.10352 4.27331 4.50471 4.61743 4.70315 4.73108 4.84520 4.92872 4.98603 5.03979 5.13748 5.14980 5.26124 5.34541 5.39791 5.43465 5.55030 5.61264 5.65355 5.71425 5.86641 6.04422 6.39196 6.43805 6.80795 6.92127 7.47697 8.97805 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045256 B = 0.011471 C = 0.010662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.551546 B = 2440.457514 C = 2625.613934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.108 3.892 5 H 0.015 0.985 6 C -0.093 4.093 7 C 0.035 3.965 8 H -0.015 1.015 9 C -0.512 4.512 10 H 0.047 0.953 11 C 0.013 3.987 12 N -0.917 5.917 13 Si 0.945 3.055 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.271 1.271 17 C -0.099 4.099 18 C 0.082 3.918 19 N -0.673 5.673 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.259 0.741 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.011 0.989 34 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 6.039 -6.356 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.188 4.188 4 C -0.002 4.002 5 H 0.033 0.967 6 C -0.131 4.131 7 C 0.016 3.984 8 H 0.004 0.996 9 C -0.550 4.550 10 H 0.065 0.935 11 C -0.185 4.185 12 N -0.557 5.557 13 Si 0.771 3.229 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.137 4.137 18 C -0.047 4.047 19 N -0.306 5.306 20 H 0.080 0.920 21 H 0.089 0.911 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.247 6.424 -6.178 11.487 hybrid contribution -0.327 -2.051 0.377 2.111 sum -7.574 4.372 -5.800 10.494 Atomic orbital electron populations 1.21816 0.94265 1.01351 1.02620 1.21190 0.96525 0.97204 0.96012 1.21686 1.00361 0.95024 1.01732 1.21285 0.94703 0.94068 0.90165 0.96666 1.21555 0.95255 0.98701 0.97554 1.18748 0.93542 0.93774 0.92331 0.99639 1.21381 1.32396 0.95967 1.05246 0.93488 1.25665 0.95441 1.01876 0.95526 1.70016 1.38930 1.36432 1.10318 0.85756 0.78713 0.81237 0.77155 1.20377 1.20961 1.19575 1.21380 0.94559 0.96505 1.01274 1.21597 0.96261 0.95092 0.91778 1.60416 1.16330 1.52531 1.01352 0.91966 0.91073 0.93609 0.91548 0.92025 0.92158 0.93833 0.92713 0.93922 0.93208 0.92155 0.95460 0.91720 0.97105 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.87 71.98 0.64 -2.73 16 2 C -0.09 -2.60 2.80 -10.79 -0.03 -2.63 16 3 C -0.13 -3.46 8.69 71.98 0.63 -2.83 16 4 C 0.11 4.02 2.04 44.94 0.09 4.11 16 5 H 0.02 0.66 6.78 -2.38 -0.02 0.64 16 6 C -0.09 -3.97 4.50 30.64 0.14 -3.83 16 7 C 0.03 1.79 2.60 -11.46 -0.03 1.76 16 8 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 9 C -0.51 -28.28 6.73 25.60 0.17 -28.11 16 10 H 0.05 2.59 6.86 -2.91 -0.02 2.57 16 11 C 0.01 0.73 5.31 84.66 0.45 1.18 16 12 N -0.92 -53.62 11.34 21.45 0.24 -53.38 16 13 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 C -0.10 -4.85 5.42 30.65 0.17 -4.68 16 18 C 0.08 3.47 6.34 86.33 0.55 4.02 16 19 N -0.67 -24.26 5.72 -491.69 -2.81 -27.07 16 20 H 0.06 1.40 6.53 -2.39 -0.02 1.38 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.06 1.65 7.60 -2.39 -0.02 1.63 16 26 H 0.04 1.24 6.41 -2.39 -0.02 1.23 16 27 H 0.05 2.22 6.39 -2.39 -0.02 2.20 16 28 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 30 H 0.06 3.33 6.06 -2.39 -0.01 3.31 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.01 0.51 7.31 -2.39 -0.02 0.49 16 34 H 0.34 10.40 6.78 -89.69 -0.61 9.79 16 Total: -1.00 -59.52 255.37 2.68 -56.85 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.45 Total: 11.12 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 2.77 Total: -33.74 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -2.57 Total: -80.45 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -59.52 2.68 -56.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259564994.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.245 kcal (2) G-P(sol) polarization free energy of solvation -59.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds