Wall clock time and date at job start Mon Mar 30 2020 02:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47239 * 2 1 4 4 C 1.52997 * 109.47018 * 120.00223 * 2 1 3 5 5 H 1.09002 * 109.46278 * 60.00128 * 4 2 1 6 6 C 1.53033 * 109.46187 * 179.97438 * 4 2 1 7 7 C 1.53125 * 109.28144 * 179.19308 * 6 4 2 8 8 H 1.09003 * 109.52049 * 62.25500 * 7 6 4 9 9 C 1.50693 * 109.52568 * 182.37705 * 7 6 4 10 10 H 1.08003 * 120.00391 * 5.43211 * 9 7 6 11 11 C 1.37878 * 120.00231 * 185.42911 * 9 7 6 12 12 N 1.31524 * 119.99651 * 9.55754 * 11 9 7 13 13 Si 1.86799 * 120.00190 * 189.55548 * 11 9 7 14 14 H 1.48496 * 109.47126 * 94.99081 * 13 11 9 15 15 H 1.48499 * 109.46959 * 214.98966 * 13 11 9 16 16 H 1.48498 * 109.47343 * 334.98978 * 13 11 9 17 17 C 1.53120 * 109.15781 * 302.35079 * 7 6 4 18 18 C 1.53033 * 109.28090 * 57.65189 * 17 7 6 19 19 N 1.46844 * 109.46214 * 300.02037 * 4 2 1 20 20 H 1.09000 * 109.47181 * 299.99674 * 1 2 3 21 21 H 1.08997 * 109.46886 * 60.00139 * 1 2 3 22 22 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46722 * 240.00070 * 2 1 3 24 24 H 1.09003 * 109.47092 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47255 * 300.00265 * 3 2 1 26 26 H 1.09002 * 109.47206 * 60.00366 * 3 2 1 27 27 H 1.09005 * 109.50979 * 299.13668 * 6 4 2 28 28 H 1.08998 * 109.50522 * 59.25668 * 6 4 2 29 29 H 0.97002 * 119.99252 * 179.97438 * 12 11 9 30 30 H 1.09001 * 109.49660 * 177.59600 * 17 7 6 31 31 H 1.08994 * 109.49905 * 297.70358 * 17 7 6 32 32 H 1.09001 * 109.46081 * 60.83568 * 18 17 7 33 33 H 1.08998 * 109.46091 * 180.80230 * 18 17 7 34 34 H 1.00895 * 110.99873 * 302.33795 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7489 1.2490 6 6 3.5703 -0.7217 1.2487 7 6 4.0762 -1.4267 2.5104 8 1 3.7447 -2.4651 2.5051 9 6 5.5820 -1.3791 2.5445 10 1 6.1218 -0.8201 1.7945 11 6 6.2707 -2.0490 3.5334 12 7 5.6344 -2.8788 4.3312 13 14 8.1074 -1.7784 3.7399 14 1 8.3413 -0.7384 4.7738 15 1 8.7506 -3.0488 4.1613 16 1 8.6904 -1.3328 2.4489 17 6 3.5122 -0.7157 3.7436 18 6 1.9835 -0.7155 3.6718 19 7 1.5500 -0.0292 2.4481 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 3.9339 -1.2490 0.3666 28 1 3.9346 0.3055 1.2351 29 1 6.1191 -3.3504 5.0267 30 1 3.8342 -1.2388 4.6441 31 1 3.8755 0.3115 3.7693 32 1 1.6204 -1.7432 3.6601 33 1 1.5792 -0.1975 4.5414 34 1 1.8415 0.9367 2.4525 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259564996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:01 Heat of formation + Delta-G solvation = -30.469006 kcal Electronic energy + Delta-G solvation = -13269.139272 eV Core-core repulsion = 11200.468641 eV Total energy + Delta-G solvation = -2068.670631 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.64782 -34.64982 -32.72332 -30.34337 -28.75952 -26.86580 -25.24383 -22.75844 -21.72695 -19.33859 -18.90538 -16.28240 -15.20620 -14.68997 -14.33347 -13.60774 -13.49863 -13.18729 -12.69698 -12.41074 -11.98074 -11.78311 -11.62127 -11.17368 -10.95497 -10.90253 -10.66397 -10.41083 -10.29858 -10.09759 -9.92365 -9.40586 -9.21003 -8.86423 -8.31745 -7.49233 -6.00578 -4.02759 3.29457 3.36936 3.39883 4.44075 4.96026 5.24649 5.30103 5.34539 5.43625 5.87456 5.93447 6.01954 6.12903 6.15638 6.26004 6.28583 6.39475 6.43143 6.50912 6.54680 6.70420 6.74507 6.80372 7.05131 7.14772 7.33516 7.60148 7.81397 7.98658 8.04127 8.07879 8.46405 9.01406 9.60574 11.07567 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.056178 B = 0.009556 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.297256 B = 2929.282205 C = 3180.903725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.149 4.149 4 C 0.090 3.910 5 H 0.071 0.929 6 C -0.138 4.138 7 C 0.048 3.952 8 H 0.030 0.970 9 C -0.515 4.515 10 H 0.052 0.948 11 C 0.063 3.937 12 N -0.888 5.888 13 Si 0.885 3.115 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.138 4.138 18 C 0.054 3.946 19 N -0.682 5.682 20 H 0.065 0.935 21 H 0.039 0.961 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.259 0.741 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 5.532 -5.011 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.020 4.020 5 H 0.089 0.911 6 C -0.177 4.177 7 C 0.030 3.970 8 H 0.049 0.951 9 C -0.553 4.553 10 H 0.071 0.929 11 C -0.138 4.138 12 N -0.526 5.526 13 Si 0.713 3.287 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.178 4.178 18 C -0.075 4.075 19 N -0.311 5.311 20 H 0.084 0.916 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.827 5.089 -4.869 10.529 hybrid contribution 2.143 0.288 0.284 2.181 sum -5.684 5.377 -4.585 9.069 Atomic orbital electron populations 1.21708 0.95325 1.01188 1.01074 1.21144 0.95775 0.96146 0.97743 1.21889 1.01347 0.96370 1.01031 1.21598 0.94051 0.97295 0.89080 0.91113 1.22371 0.94194 1.00540 1.00629 1.18667 0.94838 0.94826 0.88717 0.95149 1.21190 0.91444 1.30870 1.11814 0.92924 1.24970 0.97970 0.94607 0.96286 1.69977 1.36013 1.26595 1.20057 0.86686 0.85998 0.77600 0.78375 1.20773 1.21298 1.19959 1.22198 0.92956 0.99558 1.03045 1.22064 0.95967 0.98497 0.90952 1.60886 1.62456 1.05709 1.02074 0.91630 0.94182 0.93418 0.91686 0.92338 0.93527 0.92542 0.93330 0.93177 0.93110 0.90844 0.94673 0.91954 0.92741 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.04 37.16 0.34 -1.45 16 2 C -0.09 -1.30 2.80 -90.62 -0.25 -1.56 16 3 C -0.15 -2.02 8.51 37.15 0.32 -1.71 16 4 C 0.09 1.58 2.24 -67.73 -0.15 1.43 16 5 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 6 C -0.14 -2.87 4.25 -26.65 -0.11 -2.98 16 7 C 0.05 1.20 2.03 -91.65 -0.19 1.01 16 8 H 0.03 0.85 8.09 -51.93 -0.42 0.43 16 9 C -0.52 -14.31 8.48 -34.44 -0.29 -14.61 16 10 H 0.05 1.46 7.77 -52.48 -0.41 1.05 16 11 C 0.06 1.77 5.23 -17.82 -0.09 1.68 16 12 N -0.89 -25.79 12.20 55.43 0.68 -25.11 16 13 Si 0.89 21.52 29.55 -169.99 -5.02 16.50 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.14 -3.19 5.17 -26.65 -0.14 -3.32 16 18 C 0.05 1.05 6.55 -3.83 -0.03 1.02 16 19 N -0.68 -11.78 5.70 -106.77 -0.61 -12.39 16 20 H 0.06 0.90 7.60 -51.93 -0.39 0.50 16 21 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.85 6.41 -51.93 -0.33 0.52 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.75 6.61 -51.93 -0.34 0.41 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.03 6.39 -51.93 -0.33 0.70 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.07 1.90 7.00 -51.93 -0.36 1.54 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.33 5.46 6.88 -39.29 -0.27 5.19 16 LS Contribution 261.41 15.07 3.94 3.94 Total: -1.00 -27.94 261.41 -7.42 -35.36 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.80 Total: 2.19 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -0.60 Total: -20.48 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.07 Total: -37.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.94 -7.42 -35.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259564996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.887 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds