Wall clock time and date at job start Mon Mar 30 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46928 * 2 1 4 4 C 1.53002 * 109.47155 * 119.99288 * 2 1 3 5 5 H 1.08999 * 109.46261 * 300.02703 * 4 2 1 6 6 C 1.53040 * 109.45354 * 180.02562 * 4 2 1 7 7 C 1.53120 * 109.27503 * 180.81160 * 6 4 2 8 8 H 1.09002 * 109.52503 * 297.75113 * 7 6 4 9 9 C 1.50706 * 109.57283 * 177.59028 * 7 6 4 10 10 H 1.08000 * 119.99847 * 0.16490 * 9 7 6 11 11 C 1.37875 * 120.00020 * 180.15588 * 9 7 6 12 12 N 1.31516 * 119.99897 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00117 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47005 * 90.00251 * 13 11 9 15 15 H 1.48494 * 109.47520 * 210.00564 * 13 11 9 16 16 H 1.48501 * 109.46983 * 330.00718 * 13 11 9 17 17 C 1.53117 * 109.16267 * 57.65831 * 7 6 4 18 18 C 1.53042 * 109.27613 * 302.34396 * 17 7 6 19 19 N 1.46841 * 109.52629 * 59.17734 * 18 17 7 20 20 H 1.08997 * 109.46782 * 60.00736 * 1 2 3 21 21 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47132 * 300.00430 * 1 2 3 23 23 H 1.08997 * 109.47401 * 240.00048 * 2 1 3 24 24 H 1.09002 * 109.46895 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46651 * 299.99550 * 3 2 1 26 26 H 1.08997 * 109.47566 * 59.99835 * 3 2 1 27 27 H 1.09002 * 109.49908 * 60.87531 * 6 4 2 28 28 H 1.08999 * 109.50429 * 300.75033 * 6 4 2 29 29 H 0.97004 * 119.99733 * 179.97438 * 12 11 9 30 30 H 1.09003 * 109.50515 * 62.27809 * 17 7 6 31 31 H 1.08994 * 109.50675 * 182.40217 * 17 7 6 32 32 H 1.08998 * 109.46453 * 179.19715 * 18 17 7 33 33 H 1.08998 * 109.46244 * 299.16399 * 18 17 7 34 34 H 1.00905 * 111.00049 * 62.35313 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6762 -0.2073 2.1392 6 6 3.5704 -0.7203 1.2492 7 6 4.0763 -1.4604 2.4906 8 1 3.7448 -0.9368 3.3873 9 6 5.5822 -1.5151 2.4670 10 1 6.1262 -1.0647 1.6499 11 6 6.2654 -2.1401 3.4885 12 7 5.6030 -2.6889 4.4833 13 14 8.1319 -2.2085 3.4590 14 1 8.6820 -1.0171 4.1540 15 1 8.5931 -3.4404 4.1480 16 1 8.6045 -2.2223 2.0512 17 6 3.5126 -2.8840 2.4915 18 6 1.9839 -2.8221 2.4555 19 7 1.5500 -2.1054 1.2496 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 3.9337 0.3073 1.2649 28 1 3.9346 -1.2221 0.3528 29 1 6.0837 -3.1289 5.2019 30 1 3.8758 -3.4199 1.6145 31 1 3.8347 -3.4024 3.3946 32 1 1.5796 -3.8343 2.4417 33 1 1.6207 -2.2982 3.3397 34 1 1.8413 -2.5922 0.4151 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259564997.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:02 Heat of formation + Delta-G solvation = -31.315103 kcal Electronic energy + Delta-G solvation = -13216.014992 eV Core-core repulsion = 11147.307671 eV Total energy + Delta-G solvation = -2068.707320 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.50710 -34.71119 -32.84177 -30.35278 -28.76935 -26.84069 -25.05872 -22.49805 -21.61215 -19.62042 -19.07982 -16.28596 -15.12487 -14.65962 -14.29952 -13.64831 -13.33459 -12.92469 -12.77840 -12.59741 -11.96621 -11.71237 -11.67325 -11.12990 -10.91926 -10.74152 -10.69718 -10.47669 -10.35506 -10.04296 -9.96500 -9.42234 -9.17293 -8.81086 -8.36440 -7.47740 -5.96804 -4.04398 3.29378 3.36167 3.39345 4.43283 4.90161 5.21049 5.31222 5.36719 5.62087 5.87747 5.93127 6.02604 6.09796 6.17568 6.18675 6.36144 6.41067 6.46891 6.52147 6.58306 6.70058 6.75355 6.83356 7.09267 7.17845 7.40975 7.63847 7.80879 8.00166 8.06637 8.18760 8.46889 8.99574 9.60292 11.07495 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051982 B = 0.009733 C = 0.008563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.519428 B = 2876.122173 C = 3268.977028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.091 3.909 5 H 0.070 0.930 6 C -0.138 4.138 7 C 0.050 3.950 8 H 0.023 0.977 9 C -0.513 4.513 10 H 0.052 0.948 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.889 3.111 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.143 4.143 18 C 0.055 3.945 19 N -0.684 5.684 20 H 0.039 0.961 21 H 0.064 0.936 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.259 0.741 30 H 0.032 0.968 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 3.089 -6.391 9.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.019 4.019 5 H 0.088 0.912 6 C -0.177 4.177 7 C 0.031 3.969 8 H 0.041 0.959 9 C -0.551 4.551 10 H 0.071 0.929 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.717 3.283 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.183 4.183 18 C -0.075 4.075 19 N -0.312 5.312 20 H 0.058 0.942 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.625 3.149 -5.945 10.169 hybrid contribution 2.139 -0.243 -0.091 2.154 sum -5.487 2.906 -6.036 8.659 Atomic orbital electron populations 1.21705 0.95316 1.02130 1.00092 1.21123 0.95774 0.95698 0.98172 1.21868 1.01610 0.96037 1.00947 1.21622 0.94009 0.89368 0.96924 0.91173 1.22368 0.94260 1.00560 1.00514 1.18655 0.94771 0.91443 0.92025 0.95906 1.21220 0.91498 1.35495 1.06865 0.92945 1.24975 0.98125 0.95445 0.95489 1.69885 1.34977 1.37402 1.10667 0.86642 0.86133 0.77447 0.78054 1.20729 1.21248 1.20034 1.22248 0.92379 1.01069 1.02589 1.22081 0.96353 0.96711 0.92314 1.60869 1.62461 1.02745 1.05098 0.94188 0.91691 0.93391 0.91973 0.92132 0.93397 0.92909 0.92967 0.93666 0.93098 0.94911 0.88993 0.92758 0.92133 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.04 37.16 0.34 -1.46 16 2 C -0.09 -1.31 2.64 -90.62 -0.24 -1.55 16 3 C -0.15 -2.01 8.84 37.16 0.33 -1.68 16 4 C 0.09 1.61 2.00 -67.72 -0.14 1.48 16 5 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 6 C -0.14 -2.87 4.21 -26.65 -0.11 -2.98 16 7 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 8 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 9 C -0.51 -14.26 8.57 -34.44 -0.30 -14.55 16 10 H 0.05 1.45 7.75 -52.49 -0.41 1.05 16 11 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 12 N -0.89 -25.64 11.36 55.43 0.63 -25.01 16 13 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 C -0.14 -3.38 5.10 -26.65 -0.14 -3.51 16 18 C 0.05 1.07 6.55 -3.83 -0.03 1.05 16 19 N -0.68 -12.05 5.74 -106.76 -0.61 -12.67 16 20 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 21 H 0.06 0.90 7.60 -51.93 -0.39 0.50 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.88 6.45 -51.93 -0.33 0.54 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 1.08 6.48 -51.93 -0.34 0.74 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.33 5.56 8.79 -39.29 -0.35 5.21 16 LS Contribution 263.47 15.07 3.97 3.97 Total: -1.00 -27.78 263.47 -7.53 -35.31 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.92 Total: 2.47 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -0.57 Total: -20.57 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.02 Total: -37.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.78 -7.53 -35.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259564997.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.991 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds