Wall clock time and date at job start Mon Mar 30 2020 01:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47395 * 305.00741 * 10 9 7 12 12 N 1.46904 * 109.46673 * 65.00262 * 10 9 7 13 13 C 1.52999 * 109.47054 * 185.00283 * 10 9 7 14 14 C 1.53005 * 109.47007 * 300.00137 * 13 10 9 15 15 C 1.53002 * 109.46833 * 180.02562 * 14 13 10 16 16 C 1.52996 * 109.47413 * 59.99750 * 15 14 13 17 17 C 1.53000 * 109.47375 * 300.00307 * 16 15 14 18 18 C 1.52996 * 109.46846 * 180.02562 * 13 10 9 19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 21 21 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 22 22 H 1.00898 * 110.99974 * 60.00104 * 12 10 9 23 23 H 1.00899 * 110.99321 * 183.95473 * 12 10 9 24 24 H 1.08995 * 109.47070 * 60.00530 * 13 10 9 25 25 H 1.08998 * 109.46817 * 299.99930 * 14 13 10 26 26 H 1.08992 * 109.46983 * 60.00576 * 14 13 10 27 27 H 1.09008 * 109.46773 * 299.99866 * 15 14 13 28 28 H 1.08997 * 109.47219 * 180.02562 * 15 14 13 29 29 H 1.08996 * 109.47548 * 179.97438 * 16 15 14 30 30 H 1.08998 * 109.47249 * 59.99777 * 16 15 14 31 31 H 1.09008 * 109.47015 * 300.00009 * 17 16 15 32 32 H 1.09002 * 109.47259 * 179.97438 * 17 16 15 33 33 H 1.09001 * 109.47165 * 299.99729 * 18 13 10 34 34 H 1.08998 * 109.47611 * 60.00231 * 18 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9296 -3.5551 -0.8422 12 7 3.0084 -3.6538 1.2548 13 6 1.4846 -4.9835 -0.1263 14 6 0.5242 -5.1336 1.0553 15 6 -0.2361 -6.4553 0.9298 16 6 0.7585 -7.6179 0.9301 17 6 1.7189 -7.4678 -0.2514 18 6 2.4789 -6.1464 -0.1257 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.3961 -3.7517 2.0507 23 1 3.7161 -4.3730 1.2524 24 1 0.9185 -4.9896 -1.0577 25 1 1.0904 -5.1275 1.9866 26 1 -0.1841 -4.3052 1.0552 27 1 -0.8022 -6.4618 -0.0017 28 1 -0.9206 -6.5621 1.7713 29 1 0.2169 -8.5596 0.8412 30 1 1.3247 -7.6114 1.8615 31 1 1.1528 -7.4743 -1.1829 32 1 2.4278 -8.2959 -0.2509 33 1 3.1633 -6.0397 -0.9673 34 1 3.0447 -6.1402 0.8059 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259628513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:56 Heat of formation + Delta-G solvation = -58.380466 kcal Electronic energy + Delta-G solvation = -13044.611759 eV Core-core repulsion = 10974.730796 eV Total energy + Delta-G solvation = -2069.880963 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.16572 -36.40893 -34.46971 -31.69076 -30.59937 -30.13895 -26.16161 -23.99711 -23.11197 -21.17101 -20.01571 -18.40392 -16.77788 -16.44685 -16.25098 -15.35782 -15.15519 -15.03588 -14.52755 -14.21054 -13.50809 -13.29709 -13.13448 -12.97684 -12.62099 -12.41345 -12.14215 -11.97895 -11.87466 -11.47231 -11.33130 -11.17875 -10.94084 -10.66986 -10.46804 -9.18581 -8.11091 -6.16959 1.40676 1.44104 1.51719 2.46676 3.21411 3.79194 3.85037 3.89247 4.05185 4.30969 4.35903 4.55176 4.55915 4.62234 4.65479 4.81763 4.89420 5.02415 5.11076 5.16921 5.24705 5.29185 5.35571 5.41396 5.49538 5.53545 5.60274 5.77082 5.90010 6.36078 6.62061 6.92419 6.98005 7.49364 9.00450 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.066348 B = 0.008153 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.916169 B = 3433.674704 C = 3649.693408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.038 3.962 10 C 0.112 3.888 11 H 0.053 0.947 12 N -0.834 5.834 13 C -0.114 4.114 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.109 4.109 19 H 0.259 0.741 20 H -0.015 1.015 21 H -0.003 1.003 22 H 0.335 0.665 23 H 0.338 0.662 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 -14.799 1.632 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.204 4.204 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.001 3.999 10 C 0.000 4.000 11 H 0.072 0.928 12 N -0.365 5.365 13 C -0.135 4.135 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.147 4.147 19 H 0.068 0.932 20 H 0.003 0.997 21 H 0.015 0.985 22 H 0.149 0.851 23 H 0.151 0.849 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.123 -13.940 1.421 14.356 hybrid contribution -0.407 0.346 -0.011 0.535 sum 2.716 -13.594 1.410 13.935 Atomic orbital electron populations 1.70090 1.07577 1.27281 1.53233 1.25917 0.95709 1.03025 0.95713 0.85575 0.78221 0.78745 0.78876 1.19516 1.21099 1.19655 1.21560 0.93367 0.91967 1.47880 0.92553 1.18997 0.93580 0.92971 0.94369 1.21304 0.94035 0.92833 0.91832 0.92840 1.58694 1.18565 1.55458 1.03808 1.21865 0.97277 0.95933 0.98431 1.21531 0.98001 0.97456 0.97957 1.21526 0.97987 0.94266 1.01605 1.21509 0.97106 0.97748 0.98690 1.21509 0.98420 0.96789 0.98516 1.21547 0.97265 0.93999 1.01874 0.93225 0.99694 0.98509 0.85128 0.84852 0.92999 0.92020 0.94407 0.92767 0.91579 0.90758 0.91713 0.92524 0.90482 0.92156 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.99 13.29 21.45 0.28 -58.70 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.96 46.51 29.54 68.60 2.03 48.54 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.51 -30.00 8.84 25.60 0.23 -29.77 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.04 2.04 4.12 29.85 0.12 2.16 16 10 C 0.11 4.59 2.57 44.92 0.12 4.70 16 11 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 12 N -0.83 -30.92 8.77 -168.67 -1.48 -32.40 16 13 C -0.11 -3.78 2.07 -10.79 -0.02 -3.80 16 14 C -0.11 -3.55 4.52 30.60 0.14 -3.41 16 15 C -0.12 -2.93 5.92 30.59 0.18 -2.75 16 16 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 17 C -0.11 -2.39 5.92 30.58 0.18 -2.21 16 18 C -0.11 -2.75 4.86 30.58 0.15 -2.60 16 19 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 20 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 21 H 0.00 -0.19 6.71 -2.39 -0.02 -0.21 16 22 H 0.34 12.12 7.16 -89.70 -0.64 11.47 16 23 H 0.34 10.15 7.39 -89.69 -0.66 9.49 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.85 6.67 -2.39 -0.02 1.83 16 26 H 0.04 1.46 6.54 -2.39 -0.02 1.44 16 27 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.55 6.76 -2.39 -0.02 1.54 16 Total: -1.00 -65.39 261.83 2.33 -63.06 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.24 Total: 19.29 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 1.73 Total: -39.79 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -1.19 Total: -91.10 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -65.39 2.33 -63.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.683 kcal (2) G-P(sol) polarization free energy of solvation -65.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds