Wall clock time and date at job start Mon Mar 30 2020 02:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.51901 * 304.99701 * 4 3 2 6 6 C 1.53120 * 109.52352 * 65.12788 * 4 3 2 7 7 C 1.53045 * 109.27409 * 177.49495 * 6 4 3 8 8 N 1.46838 * 109.57480 * 300.91407 * 7 6 4 9 9 C 1.46848 * 111.20013 * 61.70960 * 8 7 6 10 10 H 1.08992 * 109.46167 * 58.27379 * 9 8 7 11 11 C 1.50702 * 109.45572 * 178.24907 * 9 8 7 12 12 H 1.07999 * 120.00260 * 120.04425 * 11 9 8 13 13 C 1.37882 * 119.99969 * 300.04905 * 11 9 8 14 14 N 1.31517 * 119.99839 * 0.02562 * 13 11 9 15 15 Si 1.86791 * 120.00100 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47228 * 90.00077 * 15 13 11 17 17 H 1.48499 * 109.47428 * 209.99912 * 15 13 11 18 18 H 1.48494 * 109.47348 * 329.99673 * 15 13 11 19 19 C 1.53039 * 109.52426 * 298.25786 * 9 8 7 20 20 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 21 21 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 22 22 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 24 24 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 25 25 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 26 26 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 27 27 H 1.09001 * 109.49803 * 297.49834 * 6 4 3 28 28 H 1.08995 * 109.50470 * 57.61131 * 6 4 3 29 29 H 1.08999 * 109.46288 * 180.86240 * 7 6 4 30 30 H 1.09001 * 109.39805 * 60.92595 * 7 6 4 31 31 H 1.00910 * 111.00077 * 297.61360 * 8 7 6 32 32 H 0.97000 * 120.00263 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.50229 * 299.23665 * 19 9 8 34 34 H 1.08994 * 109.50137 * 179.11885 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9346 0.8530 0.8407 6 6 4.0812 0.8356 -1.3103 7 6 5.6103 0.8954 -1.3318 8 7 6.0498 2.2914 -1.2125 9 6 5.6109 2.8794 0.0595 10 1 6.0079 2.2919 0.8872 11 6 6.1184 4.2949 0.1596 12 1 5.4203 5.1131 0.2579 13 6 7.4738 4.5454 0.1257 14 7 8.3238 3.5491 0.0054 15 14 8.1027 6.2999 0.2491 16 1 8.3262 6.6465 1.6758 17 1 9.3817 6.4209 -0.4958 18 1 7.1005 7.2273 -0.3345 19 6 4.0818 2.8803 0.1219 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6768 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.7556 -0.2022 -1.3819 28 1 3.6838 1.4012 -2.1529 29 1 5.9769 0.4780 -2.2697 30 1 6.0071 0.3171 -0.4974 31 1 5.7268 2.8403 -1.9952 32 1 9.2774 3.7252 -0.0181 33 1 3.6845 3.4792 -0.6977 34 1 3.7568 3.3025 1.0727 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259806275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:30 Heat of formation + Delta-G solvation = -31.803806 kcal Electronic energy + Delta-G solvation = -12969.764211 eV Core-core repulsion = 10901.035699 eV Total energy + Delta-G solvation = -2068.728512 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -38.25278 -34.82006 -32.47511 -30.74899 -29.75546 -26.03257 -24.94951 -21.83888 -21.66217 -19.99875 -19.25183 -16.34971 -15.08283 -14.56739 -14.21295 -13.87891 -13.53495 -13.18689 -13.03894 -12.46119 -12.18506 -11.95410 -11.43430 -11.03187 -10.92935 -10.81788 -10.75614 -10.41510 -10.35920 -10.30262 -9.97963 -9.57134 -9.42094 -8.73856 -8.33345 -6.66904 -5.79788 -3.94139 3.37547 3.44614 3.47237 4.53392 5.03583 5.09980 5.26266 5.36843 5.44255 5.62695 5.72805 5.82668 5.90639 5.99249 6.07360 6.15560 6.23701 6.25622 6.29320 6.46223 6.50428 6.61962 6.66460 6.77103 7.00118 7.02846 7.10202 7.64924 7.98429 8.33414 8.72844 9.04568 9.23238 9.74354 11.24383 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.063816 B = 0.008217 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.658191 B = 3406.945438 C = 3715.491634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.088 4.088 5 H 0.061 0.939 6 C -0.149 4.149 7 C 0.056 3.944 8 N -0.648 5.648 9 C 0.221 3.779 10 H 0.035 0.965 11 C -0.537 4.537 12 H 0.052 0.948 13 C 0.082 3.918 14 N -0.849 5.849 15 Si 0.881 3.119 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.138 4.138 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.318 0.682 32 H 0.254 0.746 33 H 0.045 0.955 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.431 -5.624 -1.205 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.106 4.106 5 H 0.079 0.921 6 C -0.188 4.188 7 C -0.075 4.075 8 N -0.276 5.276 9 C 0.113 3.887 10 H 0.053 0.947 11 C -0.576 4.576 12 H 0.070 0.930 13 C -0.124 4.124 14 N -0.484 5.484 15 Si 0.709 3.291 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.178 4.178 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.577 -5.850 -0.979 11.265 hybrid contribution -0.630 1.048 -0.121 1.228 sum -10.206 -4.802 -1.100 11.333 Atomic orbital electron populations 1.21786 0.96550 1.00995 1.01531 1.21582 0.95068 0.97791 1.01852 1.21676 0.96272 0.95766 1.01313 1.21238 0.93523 0.98329 0.97538 0.92061 1.22405 0.99779 0.99423 0.97225 1.21984 0.90711 0.94597 1.00165 1.60949 1.62307 0.99241 1.05080 1.19087 0.85878 0.94990 0.88695 0.94742 1.21007 0.91642 0.91772 1.53148 0.92963 1.24975 0.97124 0.96024 0.94308 1.70114 1.01528 1.29997 1.46746 0.86808 0.78349 0.86060 0.77881 1.20872 1.21339 1.20096 1.22394 1.01631 0.93363 1.00363 0.93000 0.93011 0.93241 0.92001 0.92359 0.92542 0.92626 0.93195 0.93081 0.93099 0.92408 0.86490 0.93565 0.93590 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.13 -1.57 5.69 -26.73 -0.15 -1.73 16 3 C -0.11 -1.65 4.69 -26.73 -0.13 -1.78 16 4 C -0.09 -1.54 2.25 -90.49 -0.20 -1.74 16 5 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 6 C -0.15 -2.53 5.06 -26.65 -0.13 -2.66 16 7 C 0.06 1.12 6.55 -3.83 -0.03 1.10 16 8 N -0.65 -15.55 5.80 -107.99 -0.63 -16.18 16 9 C 0.22 5.57 2.29 -68.87 -0.16 5.42 16 10 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.54 -14.96 8.70 -34.44 -0.30 -15.26 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 13 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 14 N -0.85 -25.09 12.77 55.43 0.71 -24.38 16 15 Si 0.88 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.14 -2.89 4.58 -26.65 -0.12 -3.01 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.77 6.63 -51.93 -0.34 0.43 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.75 6.70 -51.93 -0.35 0.41 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.32 7.50 8.79 -39.29 -0.35 7.16 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 268.56 15.07 4.05 4.05 Total: -1.00 -28.70 268.56 -7.92 -36.61 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.07 Total: 2.12 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -0.95 Total: -18.69 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.08 Total: -40.56 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.70 -7.92 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259806275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.809 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds