Wall clock time and date at job start Mon Mar 30 2020 02:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.51901 * 304.99701 * 4 3 2 6 6 C 1.53120 * 109.52352 * 65.12788 * 4 3 2 7 7 C 1.53045 * 109.27409 * 177.49495 * 6 4 3 8 8 N 1.46838 * 109.57480 * 300.91407 * 7 6 4 9 9 C 1.46848 * 111.20013 * 61.70960 * 8 7 6 10 10 H 1.08992 * 109.46167 * 58.27379 * 9 8 7 11 11 C 1.50702 * 109.45572 * 178.24907 * 9 8 7 12 12 H 1.07999 * 120.00260 * 120.04425 * 11 9 8 13 13 C 1.37882 * 119.99969 * 300.04905 * 11 9 8 14 14 N 1.31517 * 119.99839 * 0.02562 * 13 11 9 15 15 Si 1.86791 * 120.00100 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47228 * 90.00077 * 15 13 11 17 17 H 1.48499 * 109.47428 * 209.99912 * 15 13 11 18 18 H 1.48494 * 109.47348 * 329.99673 * 15 13 11 19 19 C 1.53039 * 109.52426 * 298.25786 * 9 8 7 20 20 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 21 21 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 22 22 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 24 24 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 25 25 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 26 26 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 27 27 H 1.09001 * 109.49803 * 297.49834 * 6 4 3 28 28 H 1.08995 * 109.50470 * 57.61131 * 6 4 3 29 29 H 1.08999 * 109.46288 * 180.86240 * 7 6 4 30 30 H 1.09001 * 109.39805 * 60.92595 * 7 6 4 31 31 H 1.00910 * 111.00077 * 297.61360 * 8 7 6 32 32 H 0.97000 * 120.00263 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.50229 * 299.23665 * 19 9 8 34 34 H 1.08994 * 109.50137 * 179.11885 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9346 0.8530 0.8407 6 6 4.0812 0.8356 -1.3103 7 6 5.6103 0.8954 -1.3318 8 7 6.0498 2.2914 -1.2125 9 6 5.6109 2.8794 0.0595 10 1 6.0079 2.2919 0.8872 11 6 6.1184 4.2949 0.1596 12 1 5.4203 5.1131 0.2579 13 6 7.4738 4.5454 0.1257 14 7 8.3238 3.5491 0.0054 15 14 8.1027 6.2999 0.2491 16 1 8.3262 6.6465 1.6758 17 1 9.3817 6.4209 -0.4958 18 1 7.1005 7.2273 -0.3345 19 6 4.0818 2.8803 0.1219 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6768 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.7556 -0.2022 -1.3819 28 1 3.6838 1.4012 -2.1529 29 1 5.9769 0.4780 -2.2697 30 1 6.0071 0.3171 -0.4974 31 1 5.7268 2.8403 -1.9952 32 1 9.2774 3.7252 -0.0181 33 1 3.6845 3.4792 -0.6977 34 1 3.7568 3.3025 1.0727 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259806275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:30 Heat of formation + Delta-G solvation = -49.309482 kcal Electronic energy + Delta-G solvation = -12970.523314 eV Core-core repulsion = 10901.035699 eV Total energy + Delta-G solvation = -2069.487615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.84507 -36.19781 -34.42643 -32.17323 -31.55784 -27.42370 -26.84640 -23.29321 -23.19590 -21.47228 -20.86772 -18.41209 -16.57626 -16.30882 -15.73336 -15.30589 -15.12359 -14.85822 -14.34515 -14.02826 -13.67922 -13.40237 -12.87251 -12.75963 -12.54253 -12.39051 -12.21178 -12.14161 -11.87150 -11.54710 -11.43844 -11.30118 -11.13007 -10.63030 -10.50135 -8.48955 -7.94130 -6.17024 1.43981 1.44903 1.54637 2.48402 3.25750 3.84462 3.92545 3.99684 4.20884 4.28660 4.42903 4.51822 4.61981 4.68901 4.81045 4.84193 4.94058 4.99857 5.01780 5.12790 5.17605 5.26411 5.29457 5.36782 5.45347 5.49006 5.54475 5.69232 5.82847 6.25600 6.70363 7.17990 7.19632 7.56027 9.08244 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.063816 B = 0.008217 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.658191 B = 3406.945438 C = 3715.491634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.105 4.105 4 C -0.083 4.083 5 H 0.051 0.949 6 C -0.136 4.136 7 C 0.056 3.944 8 N -0.671 5.671 9 C 0.222 3.778 10 H -0.006 1.006 11 C -0.556 4.556 12 H 0.049 0.951 13 C 0.033 3.967 14 N -0.883 5.883 15 Si 0.949 3.051 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.270 1.270 19 C -0.128 4.128 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.319 0.681 32 H 0.254 0.746 33 H 0.045 0.955 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.860 -5.791 -1.802 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.143 4.143 4 C -0.102 4.102 5 H 0.069 0.931 6 C -0.176 4.176 7 C -0.074 4.074 8 N -0.299 5.299 9 C 0.114 3.886 10 H 0.012 0.988 11 C -0.594 4.594 12 H 0.067 0.933 13 C -0.171 4.171 14 N -0.519 5.519 15 Si 0.775 3.225 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.194 1.194 19 C -0.168 4.168 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.025 -6.019 -1.574 12.659 hybrid contribution -0.173 1.069 0.081 1.086 sum -11.198 -4.950 -1.493 12.334 Atomic orbital electron populations 1.21759 0.94964 1.02050 1.01840 1.21550 0.96450 0.95973 1.02032 1.21591 0.93582 0.97582 1.01539 1.21177 0.95809 0.95606 0.97603 0.93077 1.22258 0.97103 1.01220 0.96977 1.22001 0.93094 0.92012 1.00322 1.60703 1.63685 1.01117 1.04360 1.18872 0.88452 0.93151 0.88092 0.98830 1.21400 0.92048 0.93061 1.52916 0.93291 1.25725 0.97361 1.00000 0.93985 1.70251 1.01638 1.32114 1.47909 0.85738 0.77679 0.81185 0.77946 1.20352 1.21077 1.19413 1.22200 0.98614 0.95967 0.99972 0.92836 0.92614 0.91859 0.91582 0.92445 0.92556 0.92215 0.90369 0.92364 0.91459 0.93977 0.86408 0.93679 0.93574 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.12 -2.72 5.69 30.60 0.17 -2.55 16 3 C -0.11 -2.85 4.69 30.60 0.14 -2.70 16 4 C -0.08 -2.83 2.25 -10.71 -0.02 -2.85 16 5 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 6 C -0.14 -4.35 5.06 30.65 0.16 -4.20 16 7 C 0.06 2.19 6.55 86.33 0.57 2.76 16 8 N -0.67 -32.53 5.80 -495.57 -2.88 -35.41 16 9 C 0.22 11.48 2.29 44.19 0.10 11.58 16 10 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 11 C -0.56 -31.46 8.70 25.60 0.22 -31.24 16 12 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 13 C 0.03 1.86 5.39 84.66 0.46 2.31 16 14 N -0.88 -53.17 12.77 21.45 0.27 -52.90 16 15 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 C -0.13 -5.35 4.58 30.65 0.14 -5.21 16 20 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 21 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 1.42 6.63 -2.39 -0.02 1.40 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 2.11 6.70 -2.39 -0.02 2.09 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.32 15.10 8.79 -89.69 -0.79 14.31 16 32 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -61.64 268.56 2.33 -59.31 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.26 Total: 16.56 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 2.65 Total: -34.11 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -2.60 Total: -88.31 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.64 2.33 -59.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259806275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.000 kcal (2) G-P(sol) polarization free energy of solvation -61.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds