Wall clock time and date at job start Mon Mar 30 2020 02:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46925 * 2 1 4 4 C 1.53007 * 109.46431 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.52618 * 54.87750 * 4 3 2 6 6 C 1.53121 * 109.52458 * 294.67910 * 4 3 2 7 7 C 1.53032 * 109.27734 * 182.44314 * 6 4 3 8 8 N 1.46847 * 109.52586 * 59.18543 * 7 6 4 9 9 C 1.46847 * 111.19324 * 298.25383 * 8 7 6 10 10 H 1.09010 * 109.45228 * 181.74835 * 9 8 7 11 11 C 1.50695 * 109.46759 * 301.72539 * 9 8 7 12 12 H 1.07997 * 120.00281 * 114.52165 * 11 9 8 13 13 C 1.37879 * 119.99833 * 294.53093 * 11 9 8 14 14 N 1.31515 * 120.00059 * 164.02599 * 13 11 9 15 15 Si 1.86803 * 119.99958 * 344.02457 * 13 11 9 16 16 H 1.48497 * 109.47070 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47063 * 299.99987 * 15 13 11 18 18 H 1.48498 * 109.47241 * 60.00077 * 15 13 11 19 19 C 1.53041 * 109.52307 * 61.74411 * 9 8 7 20 20 H 1.09002 * 109.47036 * 300.00061 * 1 2 3 21 21 H 1.08998 * 109.47358 * 59.99944 * 1 2 3 22 22 H 1.09004 * 109.47087 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47036 * 239.99939 * 2 1 3 24 24 H 1.09000 * 109.46795 * 120.00557 * 2 1 3 25 25 H 1.08994 * 109.47583 * 60.00672 * 3 2 1 26 26 H 1.08995 * 109.47317 * 299.99435 * 3 2 1 27 27 H 1.09004 * 109.50492 * 302.38663 * 6 4 3 28 28 H 1.08998 * 109.49814 * 62.50358 * 6 4 3 29 29 H 1.09004 * 109.46108 * 179.19524 * 7 6 4 30 30 H 1.08993 * 109.46812 * 299.16403 * 7 6 4 31 31 H 1.00901 * 111.00102 * 174.15943 * 8 7 6 32 32 H 0.97000 * 119.99996 * 354.65179 * 14 13 11 33 33 H 1.09001 * 109.50777 * 60.75930 * 19 9 8 34 34 H 1.09002 * 109.50235 * 180.87947 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9339 0.8515 -0.8411 6 6 4.0823 0.8395 1.3104 7 6 5.6114 0.8979 1.3299 8 7 6.0508 2.2937 1.2076 9 6 5.6109 2.8793 -0.0652 10 1 5.9778 3.9030 -0.1399 11 6 6.1587 2.0648 -1.2087 12 1 5.4860 1.5217 -1.8558 13 6 7.5189 2.0128 -1.4285 14 7 8.0244 1.0785 -2.2039 15 14 8.6436 3.2693 -0.6250 16 1 10.0497 2.9979 -1.0180 17 1 8.2601 4.6331 -1.0702 18 1 8.5150 3.1761 0.8515 19 6 4.0817 2.8801 -0.1264 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6768 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.6856 1.4078 2.1518 28 1 3.7567 -0.1980 1.3855 29 1 5.9787 0.4825 2.2683 30 1 6.0077 0.3181 0.4964 31 1 7.0515 2.3684 1.3132 32 1 7.4520 0.3803 -2.5585 33 1 3.6850 3.4804 0.6923 34 1 3.7558 3.3004 -1.0778 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259806280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:36 Heat of formation + Delta-G solvation = -32.163189 kcal Electronic energy + Delta-G solvation = -13262.905158 eV Core-core repulsion = 11194.161061 eV Total energy + Delta-G solvation = -2068.744096 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.28113 -34.92440 -32.40449 -30.98070 -29.94172 -26.26415 -24.66183 -21.85403 -21.70946 -20.01065 -18.75198 -16.87228 -15.73245 -14.89293 -13.94847 -13.73305 -13.58699 -13.16066 -12.81985 -12.74706 -12.17597 -11.93092 -11.49811 -11.22283 -11.00497 -10.88599 -10.55591 -10.40104 -10.33580 -9.97775 -9.84378 -9.36088 -9.26128 -8.90113 -8.39883 -7.19289 -6.39269 -4.11633 3.31898 3.40682 3.57492 4.44436 5.11950 5.19789 5.21779 5.36142 5.50477 5.62595 5.76909 5.85529 5.99100 6.03230 6.14897 6.20416 6.35801 6.37007 6.40616 6.51796 6.59009 6.63730 6.76047 6.92968 6.98895 7.08150 7.25261 7.34321 7.99028 8.27327 8.43826 8.60555 8.89613 9.58118 10.89630 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054457 B = 0.009995 C = 0.009623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.044321 B = 2800.727380 C = 2908.983318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.079 4.079 5 H 0.073 0.927 6 C -0.099 4.099 7 C 0.066 3.934 8 N -0.699 5.699 9 C 0.171 3.829 10 H 0.033 0.967 11 C -0.616 4.616 12 H 0.057 0.943 13 C 0.028 3.972 14 N -0.905 5.905 15 Si 1.042 2.958 16 H -0.286 1.286 17 H -0.283 1.283 18 H -0.275 1.275 19 C -0.086 4.086 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.326 0.674 32 H 0.267 0.733 33 H 0.041 0.959 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.336 -0.166 5.783 10.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.098 4.098 5 H 0.091 0.909 6 C -0.137 4.137 7 C -0.064 4.064 8 N -0.333 5.333 9 C 0.063 3.937 10 H 0.051 0.949 11 C -0.655 4.655 12 H 0.075 0.925 13 C -0.177 4.177 14 N -0.539 5.539 15 Si 0.871 3.129 16 H -0.212 1.212 17 H -0.209 1.209 18 H -0.202 1.202 19 C -0.124 4.124 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.296 0.593 6.211 10.380 hybrid contribution -0.975 -0.994 -0.846 1.629 sum -9.271 -0.401 5.366 10.719 Atomic orbital electron populations 1.21783 0.96633 1.00946 1.01415 1.21577 0.94929 0.97854 1.01969 1.21686 0.96627 0.95769 1.01025 1.21102 0.92504 0.97887 0.98269 0.90885 1.21520 0.96118 0.98805 0.97251 1.21571 0.94596 0.91397 0.98865 1.61241 1.17818 1.16999 1.37255 1.19395 0.92078 0.94819 0.87368 0.94924 1.22618 0.94123 1.32972 1.15835 0.92469 1.25795 0.96852 0.98940 0.96110 1.70825 1.38875 1.12061 1.32148 0.84026 0.76384 0.76266 0.76200 1.21196 1.20904 1.20220 1.21388 0.96991 0.94986 0.99021 0.93061 0.93062 0.93286 0.92306 0.91979 0.92719 0.92735 0.92855 0.93256 0.93812 0.93816 0.85427 0.92296 0.94035 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.13 -1.74 5.69 -26.73 -0.15 -1.90 16 3 C -0.11 -1.77 4.69 -26.73 -0.13 -1.90 16 4 C -0.08 -1.52 2.00 -90.49 -0.18 -1.70 16 5 H 0.07 1.61 6.63 -51.93 -0.34 1.26 16 6 C -0.10 -1.84 5.08 -26.65 -0.14 -1.98 16 7 C 0.07 1.40 6.30 -3.84 -0.02 1.37 16 8 N -0.70 -15.92 6.63 -107.99 -0.72 -16.64 16 9 C 0.17 4.11 2.58 -68.87 -0.18 3.93 16 10 H 0.03 0.80 6.83 -51.92 -0.35 0.45 16 11 C -0.62 -16.89 6.87 -34.44 -0.24 -17.13 16 12 H 0.06 1.70 6.81 -52.49 -0.36 1.34 16 13 C 0.03 0.81 5.43 -17.82 -0.10 0.71 16 14 N -0.91 -27.49 13.70 55.43 0.76 -26.73 16 15 Si 1.04 24.92 26.49 -169.99 -4.50 20.41 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.04 5.58 56.52 0.32 -5.73 16 19 C -0.09 -1.80 4.87 -26.65 -0.13 -1.93 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.85 6.64 -51.93 -0.34 0.51 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.83 6.71 -51.93 -0.35 0.48 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 1.07 6.99 -51.93 -0.36 0.70 16 31 H 0.33 7.58 5.41 -39.29 -0.21 7.36 16 32 H 0.27 8.13 8.73 -40.82 -0.36 7.78 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 256.20 15.07 3.86 3.86 Total: -1.00 -28.66 256.20 -7.28 -35.94 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.79 Total: 5.04 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -0.89 Total: -21.89 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.04 Total: -43.37 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.50 Total: 20.41 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.66 -7.28 -35.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259806280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.776 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds