Wall clock time and date at job start Mon Mar 30 2020 02:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46925 * 2 1 4 4 C 1.53007 * 109.46431 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.52618 * 54.87750 * 4 3 2 6 6 C 1.53121 * 109.52458 * 294.67910 * 4 3 2 7 7 C 1.53032 * 109.27734 * 182.44314 * 6 4 3 8 8 N 1.46847 * 109.52586 * 59.18543 * 7 6 4 9 9 C 1.46847 * 111.19324 * 298.25383 * 8 7 6 10 10 H 1.09010 * 109.45228 * 181.74835 * 9 8 7 11 11 C 1.50695 * 109.46759 * 301.72539 * 9 8 7 12 12 H 1.07997 * 120.00281 * 114.52165 * 11 9 8 13 13 C 1.37879 * 119.99833 * 294.53093 * 11 9 8 14 14 N 1.31515 * 120.00059 * 164.02599 * 13 11 9 15 15 Si 1.86803 * 119.99958 * 344.02457 * 13 11 9 16 16 H 1.48497 * 109.47070 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47063 * 299.99987 * 15 13 11 18 18 H 1.48498 * 109.47241 * 60.00077 * 15 13 11 19 19 C 1.53041 * 109.52307 * 61.74411 * 9 8 7 20 20 H 1.09002 * 109.47036 * 300.00061 * 1 2 3 21 21 H 1.08998 * 109.47358 * 59.99944 * 1 2 3 22 22 H 1.09004 * 109.47087 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47036 * 239.99939 * 2 1 3 24 24 H 1.09000 * 109.46795 * 120.00557 * 2 1 3 25 25 H 1.08994 * 109.47583 * 60.00672 * 3 2 1 26 26 H 1.08995 * 109.47317 * 299.99435 * 3 2 1 27 27 H 1.09004 * 109.50492 * 302.38663 * 6 4 3 28 28 H 1.08998 * 109.49814 * 62.50358 * 6 4 3 29 29 H 1.09004 * 109.46108 * 179.19524 * 7 6 4 30 30 H 1.08993 * 109.46812 * 299.16403 * 7 6 4 31 31 H 1.00901 * 111.00102 * 174.15943 * 8 7 6 32 32 H 0.97000 * 119.99996 * 354.65179 * 14 13 11 33 33 H 1.09001 * 109.50777 * 60.75930 * 19 9 8 34 34 H 1.09002 * 109.50235 * 180.87947 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9339 0.8515 -0.8411 6 6 4.0823 0.8395 1.3104 7 6 5.6114 0.8979 1.3299 8 7 6.0508 2.2937 1.2076 9 6 5.6109 2.8793 -0.0652 10 1 5.9778 3.9030 -0.1399 11 6 6.1587 2.0648 -1.2087 12 1 5.4860 1.5217 -1.8558 13 6 7.5189 2.0128 -1.4285 14 7 8.0244 1.0785 -2.2039 15 14 8.6436 3.2693 -0.6250 16 1 10.0497 2.9979 -1.0180 17 1 8.2601 4.6331 -1.0702 18 1 8.5150 3.1761 0.8515 19 6 4.0817 2.8801 -0.1264 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6768 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.6856 1.4078 2.1518 28 1 3.7567 -0.1980 1.3855 29 1 5.9787 0.4825 2.2683 30 1 6.0077 0.3181 0.4964 31 1 7.0515 2.3684 1.3132 32 1 7.4520 0.3803 -2.5585 33 1 3.6850 3.4804 0.6923 34 1 3.7558 3.3004 -1.0778 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259806280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:36 Heat of formation + Delta-G solvation = -51.044996 kcal Electronic energy + Delta-G solvation = -13263.723934 eV Core-core repulsion = 11194.161061 eV Total energy + Delta-G solvation = -2069.562873 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.96089 -36.37988 -34.43927 -32.45781 -31.73890 -27.64402 -26.65478 -23.43855 -23.22090 -21.42921 -20.71696 -18.84427 -17.51142 -16.13230 -15.61359 -15.56467 -15.29320 -14.58591 -14.39998 -14.22799 -14.09940 -13.42192 -12.83535 -12.76007 -12.53988 -12.36543 -12.19197 -12.02759 -11.83486 -11.53400 -11.48650 -11.22405 -10.89232 -10.70486 -10.52590 -9.19369 -8.61262 -6.39247 1.40859 1.48378 1.68397 2.44500 3.03218 3.70619 3.92291 3.97993 4.08488 4.28651 4.44321 4.48788 4.66737 4.72844 4.82349 4.88632 4.90993 4.92311 5.00227 5.09480 5.17249 5.23650 5.30300 5.37017 5.44830 5.49208 5.52380 5.64954 5.94031 6.02349 6.40304 6.61822 6.75719 7.39048 8.60431 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054457 B = 0.009995 C = 0.009623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.044321 B = 2800.727380 C = 2908.983318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.077 4.077 5 H 0.031 0.969 6 C -0.093 4.093 7 C 0.063 3.937 8 N -0.689 5.689 9 C 0.168 3.832 10 H 0.034 0.966 11 C -0.608 4.608 12 H 0.017 0.983 13 C -0.023 4.023 14 N -0.938 5.938 15 Si 1.082 2.918 16 H -0.292 1.292 17 H -0.267 1.267 18 H -0.242 1.242 19 C -0.086 4.086 20 H 0.062 0.938 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.001 0.999 31 H 0.323 0.677 32 H 0.250 0.750 33 H 0.064 0.936 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 0.829 8.038 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.095 4.095 5 H 0.050 0.950 6 C -0.130 4.130 7 C -0.067 4.067 8 N -0.322 5.322 9 C 0.059 3.941 10 H 0.052 0.948 11 C -0.648 4.648 12 H 0.035 0.965 13 C -0.221 4.221 14 N -0.575 5.575 15 Si 0.904 3.096 16 H -0.218 1.218 17 H -0.192 1.192 18 H -0.166 1.166 19 C -0.124 4.124 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.020 0.980 31 H 0.142 0.858 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.572 1.585 8.477 12.884 hybrid contribution -0.634 -1.356 -1.593 2.186 sum -10.206 0.228 6.885 12.313 Atomic orbital electron populations 1.21740 0.94476 1.02029 1.02071 1.21559 0.96806 0.96417 1.01480 1.21597 0.93564 0.97264 1.01799 1.21025 0.95214 0.96084 0.97212 0.95033 1.21498 0.93936 1.00332 0.97266 1.21686 0.96670 0.89973 0.98386 1.61264 1.17567 1.17715 1.35631 1.19421 0.94202 0.94051 0.86388 0.94807 1.22761 0.93643 1.32201 1.16170 0.96453 1.27206 0.99025 0.99842 0.96071 1.70958 1.38728 1.13167 1.34611 0.83542 0.74112 0.74487 0.77433 1.21809 1.19203 1.16647 1.21381 0.94893 0.96542 0.99577 0.91891 0.92923 0.92070 0.93829 0.91534 0.90925 0.92883 0.90894 0.91401 0.91270 0.98047 0.85830 0.94161 0.91769 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.24 16 2 C -0.13 -3.23 5.69 30.59 0.17 -3.05 16 3 C -0.10 -3.06 4.69 30.60 0.14 -2.91 16 4 C -0.08 -2.88 2.00 -10.71 -0.02 -2.90 16 5 H 0.03 1.43 6.63 -2.39 -0.02 1.42 16 6 C -0.09 -3.24 5.08 30.65 0.16 -3.08 16 7 C 0.06 2.58 6.30 86.32 0.54 3.13 16 8 N -0.69 -30.03 6.63 -495.57 -3.29 -33.31 16 9 C 0.17 7.91 2.58 44.19 0.11 8.02 16 10 H 0.03 1.60 6.83 -2.38 -0.02 1.58 16 11 C -0.61 -34.25 6.87 25.60 0.18 -34.08 16 12 H 0.02 1.09 6.81 -2.91 -0.02 1.07 16 13 C -0.02 -1.34 5.43 84.66 0.46 -0.88 16 14 N -0.94 -59.15 13.70 21.45 0.29 -58.86 16 15 Si 1.08 49.68 26.49 68.60 1.82 51.50 16 16 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.24 -9.72 5.58 99.48 0.56 -9.16 16 19 C -0.09 -3.50 4.87 30.65 0.15 -3.35 16 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 1.65 6.64 -2.39 -0.02 1.63 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 2.12 6.71 -2.39 -0.02 2.11 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.00 0.06 6.99 -2.39 -0.02 0.04 16 31 H 0.32 14.25 5.41 -89.69 -0.49 13.76 16 32 H 0.25 16.11 8.73 -92.71 -0.81 15.30 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -63.18 256.20 1.81 -61.37 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.38 Total: 20.65 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 2.61 Total: -41.35 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -2.99 Total: -92.17 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 1.82 Total: 51.50 kcal Total: -63.18 1.81 -61.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259806280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.321 kcal (2) G-P(sol) polarization free energy of solvation -63.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds