Wall clock time and date at job start Mon Mar 30 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99895 * 12 11 10 14 14 N 1.46901 * 109.47143 * 294.99574 * 12 11 10 15 15 C 1.53002 * 109.46776 * 174.99999 * 12 11 10 16 16 C 1.53001 * 109.46871 * 184.99808 * 15 12 11 17 17 C 1.53008 * 117.49889 * 243.74818 * 16 15 12 18 18 C 1.53000 * 117.49570 * 175.08971 * 16 15 12 19 19 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 21 21 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 22 22 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 23 23 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 25 25 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 26 26 H 1.00897 * 111.00316 * 176.04452 * 14 12 11 27 27 H 1.00902 * 111.00138 * 300.00948 * 14 12 11 28 28 H 1.08993 * 109.47416 * 304.99509 * 15 12 11 29 29 H 1.09001 * 109.46966 * 65.00241 * 15 12 11 30 30 H 1.09002 * 115.55173 * 29.41333 * 16 15 12 31 31 H 1.09002 * 117.49378 * 359.97438 * 17 16 15 32 32 H 1.08996 * 117.50003 * 145.02462 * 17 16 15 33 33 H 1.09008 * 117.49687 * 214.97622 * 18 16 15 34 34 H 1.08994 * 117.50322 * 359.97309 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0615 -4.0790 -0.0028 13 1 5.6262 -4.6180 -0.8442 14 7 5.6739 -4.7359 1.2528 15 6 7.5862 -4.0808 -0.1297 16 6 8.0857 -5.5215 -0.2556 17 6 8.9824 -6.0585 0.8619 18 6 9.5799 -5.7314 -0.5090 19 1 -0.4851 0.8401 0.0004 20 1 3.8752 -0.6804 0.8888 21 1 3.8744 -0.6801 -0.8912 22 1 3.6578 -3.1506 -0.8907 23 1 3.6585 -3.1501 0.8892 24 1 5.9156 -2.1223 0.8873 25 1 5.9141 -2.1230 -0.8927 26 1 5.9428 -5.7083 1.2502 27 1 6.0653 -4.2545 2.0485 28 1 7.8777 -3.5166 -1.0155 29 1 8.0250 -3.6202 0.7554 30 1 7.3927 -6.2202 -0.7243 31 1 9.2167 -5.3852 1.6865 32 1 8.8796 -7.1105 1.1280 33 1 9.8700 -6.5685 -1.1441 34 1 10.2070 -4.8433 -0.5864 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259821678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:27 Heat of formation + Delta-G solvation = -8.141185 kcal Electronic energy + Delta-G solvation = -12233.121702 eV Core-core repulsion = 10165.419278 eV Total energy + Delta-G solvation = -2067.702424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.40823 -35.96235 -33.43251 -31.51623 -28.86414 -27.47792 -23.60969 -22.60450 -20.85417 -20.34686 -19.70881 -16.59829 -16.10980 -15.72461 -14.59964 -14.22110 -14.05937 -13.65099 -13.31794 -12.63418 -12.16712 -12.10154 -11.76364 -11.51051 -11.33071 -11.04030 -10.67142 -10.53767 -10.45738 -10.14431 -9.74790 -9.54248 -9.32940 -9.04972 -8.44431 -8.36583 -5.94596 -3.91034 3.36684 3.43440 3.48376 3.56401 4.42216 4.53784 4.66120 4.70240 4.90549 5.08400 5.23865 5.38852 5.39676 5.49311 5.59491 5.71336 5.78716 5.86266 5.89267 6.09164 6.16563 6.34056 6.53112 6.81866 6.92851 7.13031 7.39970 7.53683 7.63653 7.68188 7.92277 8.67218 9.12481 9.68939 11.19311 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.077992 B = 0.005713 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.927061 B = 4900.085738 C = 5099.278941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.063 3.937 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.071 0.929 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.113 4.113 12 C 0.095 3.905 13 H 0.078 0.922 14 N -0.834 5.834 15 C -0.126 4.126 16 C -0.151 4.151 17 C -0.183 4.183 18 C -0.183 4.183 19 H 0.261 0.739 20 H 0.012 0.988 21 H 0.006 0.994 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.334 0.666 27 H 0.336 0.664 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.205 -9.559 0.497 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.089 0.911 9 C -0.054 4.054 10 C -0.131 4.131 11 C -0.151 4.151 12 C -0.017 4.017 13 H 0.096 0.904 14 N -0.363 5.363 15 C -0.166 4.166 16 C -0.169 4.169 17 C -0.220 4.220 18 C -0.220 4.220 19 H 0.071 0.929 20 H 0.030 0.970 21 H 0.024 0.976 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.289 -9.257 0.287 19.613 hybrid contribution 1.476 0.758 0.072 1.661 sum 18.765 -8.499 0.359 20.603 Atomic orbital electron populations 1.69929 1.06292 1.26671 1.51836 1.25054 0.94714 0.99129 0.94826 0.86765 0.80346 0.83703 0.78362 1.20433 1.21520 1.19107 1.21222 0.89802 0.94356 1.49883 0.91084 1.19615 0.96945 0.93130 0.95721 1.21341 0.91420 0.98784 1.01586 1.21717 0.98827 0.93648 1.00945 1.21530 0.90600 0.96567 0.92972 0.90384 1.58849 1.67404 1.06133 1.03865 1.22118 0.98580 0.93683 1.02185 1.22405 0.93044 0.98385 1.03063 1.23051 1.04957 1.01705 0.92314 1.22950 0.96332 1.03222 0.99505 0.92913 0.96984 0.97558 0.93474 0.91604 0.92831 0.92493 0.85391 0.85186 0.91223 0.92052 0.87791 0.89005 0.88984 0.89021 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.96 13.96 55.43 0.77 -28.18 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 7 C -0.51 -15.38 9.66 -34.44 -0.33 -15.72 16 8 H 0.07 2.28 7.99 -52.48 -0.42 1.87 16 9 C -0.02 -0.42 4.04 -27.89 -0.11 -0.53 16 10 C -0.09 -1.96 5.04 -26.74 -0.13 -2.09 16 11 C -0.11 -1.85 4.86 -26.73 -0.13 -1.98 16 12 C 0.10 1.25 2.76 -67.71 -0.19 1.06 16 13 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 14 N -0.83 -10.62 8.65 -4.67 -0.04 -10.66 16 15 C -0.13 -1.36 5.14 -26.73 -0.14 -1.50 16 16 C -0.15 -1.42 4.92 -90.61 -0.45 -1.87 16 17 C -0.18 -1.54 10.18 -26.69 -0.27 -1.81 16 18 C -0.18 -1.56 10.25 -26.69 -0.27 -1.83 16 19 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 20 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 21 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.07 1.44 7.75 -51.93 -0.40 1.04 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.33 3.63 8.30 -39.29 -0.33 3.30 16 27 H 0.34 4.01 9.00 -39.29 -0.35 3.65 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 30 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.09 0.76 8.03 -51.93 -0.42 0.35 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 278.39 15.07 4.20 4.20 Total: -1.00 -31.42 278.39 -7.93 -39.35 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.06 Total: 1.90 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -2.12 Total: -24.46 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.73 Total: -38.84 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.42 -7.93 -39.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.208 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds