Wall clock time and date at job start Mon Mar 30 2020 01:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99895 * 12 11 10 14 14 N 1.46901 * 109.47143 * 294.99574 * 12 11 10 15 15 C 1.53002 * 109.46776 * 174.99999 * 12 11 10 16 16 C 1.53001 * 109.46871 * 184.99808 * 15 12 11 17 17 C 1.53008 * 117.49889 * 243.74818 * 16 15 12 18 18 C 1.53000 * 117.49570 * 175.08971 * 16 15 12 19 19 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 21 21 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 22 22 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 23 23 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 25 25 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 26 26 H 1.00897 * 111.00316 * 176.04452 * 14 12 11 27 27 H 1.00902 * 111.00138 * 300.00948 * 14 12 11 28 28 H 1.08993 * 109.47416 * 304.99509 * 15 12 11 29 29 H 1.09001 * 109.46966 * 65.00241 * 15 12 11 30 30 H 1.09002 * 115.55173 * 29.41333 * 16 15 12 31 31 H 1.09002 * 117.49378 * 359.97438 * 17 16 15 32 32 H 1.08996 * 117.50003 * 145.02462 * 17 16 15 33 33 H 1.09008 * 117.49687 * 214.97622 * 18 16 15 34 34 H 1.08994 * 117.50322 * 359.97309 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0615 -4.0790 -0.0028 13 1 5.6262 -4.6180 -0.8442 14 7 5.6739 -4.7359 1.2528 15 6 7.5862 -4.0808 -0.1297 16 6 8.0857 -5.5215 -0.2556 17 6 8.9824 -6.0585 0.8619 18 6 9.5799 -5.7314 -0.5090 19 1 -0.4851 0.8401 0.0004 20 1 3.8752 -0.6804 0.8888 21 1 3.8744 -0.6801 -0.8912 22 1 3.6578 -3.1506 -0.8907 23 1 3.6585 -3.1501 0.8892 24 1 5.9156 -2.1223 0.8873 25 1 5.9141 -2.1230 -0.8927 26 1 5.9428 -5.7083 1.2502 27 1 6.0653 -4.2545 2.0485 28 1 7.8777 -3.5166 -1.0155 29 1 8.0250 -3.6202 0.7554 30 1 7.3927 -6.2202 -0.7243 31 1 9.2167 -5.3852 1.6865 32 1 8.8796 -7.1105 1.1280 33 1 9.8700 -6.5685 -1.1441 34 1 10.2070 -4.8433 -0.5864 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259821678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:27 Heat of formation + Delta-G solvation = -28.533930 kcal Electronic energy + Delta-G solvation = -12234.005998 eV Core-core repulsion = 10165.419278 eV Total energy + Delta-G solvation = -2068.586720 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.27628 -37.10758 -35.32098 -33.44574 -30.04882 -28.99386 -25.32556 -23.22991 -22.25754 -21.44936 -21.09588 -18.83863 -17.17894 -16.52862 -16.32514 -15.70088 -15.00281 -14.97250 -14.80068 -14.35596 -13.71160 -13.32773 -13.20595 -12.76949 -12.42051 -12.37425 -12.30176 -11.81562 -11.71192 -11.43446 -11.32146 -11.25233 -10.91579 -10.83593 -10.74104 -9.37188 -8.27795 -6.31620 1.35692 1.38339 1.50959 2.37933 2.89202 3.07267 3.60649 3.80965 3.98828 4.11023 4.22354 4.22929 4.41630 4.53962 4.66228 4.77784 4.81474 4.95531 4.98163 5.04032 5.13477 5.15637 5.23846 5.25740 5.30469 5.42592 5.67127 5.71636 5.77689 6.33176 6.43752 6.76317 6.77589 7.32839 8.89635 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.077992 B = 0.005713 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.927061 B = 4900.085738 C = 5099.278941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.533 4.533 8 H 0.026 0.974 9 C -0.014 4.014 10 C -0.085 4.085 11 C -0.106 4.106 12 C 0.102 3.898 13 H 0.069 0.931 14 N -0.847 5.847 15 C -0.115 4.115 16 C -0.160 4.160 17 C -0.178 4.178 18 C -0.181 4.181 19 H 0.266 0.734 20 H 0.016 0.984 21 H 0.015 0.985 22 H 0.035 0.965 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.345 0.655 27 H 0.341 0.659 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.789 -8.968 0.586 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.044 0.956 9 C -0.051 4.051 10 C -0.123 4.123 11 C -0.144 4.144 12 C -0.010 4.010 13 H 0.088 0.912 14 N -0.377 5.377 15 C -0.154 4.154 16 C -0.179 4.179 17 C -0.215 4.215 18 C -0.218 4.218 19 H 0.075 0.925 20 H 0.035 0.965 21 H 0.034 0.966 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.159 0.841 27 H 0.154 0.846 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.890 -8.692 0.377 21.709 hybrid contribution 0.576 0.485 0.049 0.755 sum 20.466 -8.207 0.426 22.054 Atomic orbital electron populations 1.70091 1.08405 1.28143 1.52981 1.26105 0.95682 1.03761 0.94110 0.85567 0.79403 0.77839 0.79256 1.19009 1.20837 1.17039 1.21583 0.92555 0.92921 1.50081 0.95584 1.19587 0.93575 0.95908 0.96050 1.21188 0.94953 0.95867 1.00295 1.21618 0.94968 0.96128 1.01665 1.21343 0.92285 0.94383 0.92947 0.91245 1.58804 1.67967 1.07024 1.03908 1.21942 0.96373 0.94773 1.02356 1.22304 0.93669 0.97495 1.04388 1.23108 1.03930 1.02229 0.92192 1.23028 0.95373 1.03633 0.99727 0.92533 0.96534 0.96634 0.94634 0.93137 0.92236 0.91598 0.84122 0.84571 0.91244 0.91628 0.88067 0.88805 0.88132 0.88188 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.24 13.96 21.45 0.30 -61.94 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.43 16 3 Si 0.96 45.84 27.47 68.60 1.88 47.72 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -32.63 9.66 25.60 0.25 -32.38 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.69 4.04 29.84 0.12 -0.56 16 10 C -0.09 -3.55 5.04 30.59 0.15 -3.40 16 11 C -0.11 -3.27 4.86 30.59 0.15 -3.12 16 12 C 0.10 2.53 2.76 44.92 0.12 2.66 16 13 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 14 N -0.85 -20.41 8.65 -168.68 -1.46 -21.87 16 15 C -0.12 -2.23 5.14 30.60 0.16 -2.07 16 16 C -0.16 -2.68 4.92 -10.79 -0.05 -2.73 16 17 C -0.18 -2.54 10.18 30.62 0.31 -2.22 16 18 C -0.18 -2.64 10.25 30.62 0.31 -2.32 16 19 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 20 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 21 H 0.02 0.73 7.57 -2.39 -0.02 0.72 16 22 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 2.23 7.75 -2.39 -0.02 2.21 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.35 6.97 8.30 -89.70 -0.74 6.23 16 27 H 0.34 7.56 9.00 -89.69 -0.81 6.75 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.23 7.88 -2.39 -0.02 1.21 16 30 H 0.10 1.76 8.08 -2.39 -0.02 1.74 16 31 H 0.09 1.32 8.03 -2.39 -0.02 1.30 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -68.07 278.39 2.16 -65.91 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.55 Total: 15.92 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 1.99 Total: -45.73 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.16 Total: -83.81 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.72 kcal Total: -68.07 2.16 -65.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.373 kcal (2) G-P(sol) polarization free energy of solvation -68.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds