Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 C 1.52997 * 109.46879 * 120.00269 * 2 1 3 5 5 H 1.08997 * 109.47193 * 56.65639 * 4 2 1 6 6 C 1.50694 * 109.47300 * 296.64991 * 4 2 1 7 7 H 1.08002 * 120.00425 * 301.49643 * 6 4 2 8 8 C 1.37881 * 119.99871 * 121.48772 * 6 4 2 9 9 N 1.31518 * 119.99972 * 171.07701 * 8 6 4 10 10 Si 1.86804 * 120.00028 * 351.07548 * 8 6 4 11 11 H 1.48494 * 109.47323 * 89.94645 * 10 8 6 12 12 H 1.48498 * 109.47191 * 209.95183 * 10 8 6 13 13 H 1.48504 * 109.46738 * 329.94448 * 10 8 6 14 14 C 1.53009 * 109.47014 * 176.65342 * 4 2 1 15 15 H 1.08994 * 110.76172 * 62.93859 * 14 4 2 16 16 C 1.55391 * 110.84643 * 186.20497 * 14 4 2 17 17 C 1.54906 * 101.74383 * 153.86331 * 16 14 4 18 18 N 1.47848 * 104.79378 * 323.02067 * 17 16 14 19 19 C 1.47439 * 108.56796 * 24.09165 * 18 17 16 20 20 H 1.08993 * 109.46755 * 305.41089 * 1 2 3 21 21 H 1.09001 * 109.46674 * 65.41248 * 1 2 3 22 22 H 1.09004 * 109.46998 * 185.40960 * 1 2 3 23 23 H 1.08998 * 109.46860 * 239.99772 * 2 1 3 24 24 H 1.08994 * 109.46970 * 184.02576 * 3 2 1 25 25 H 1.08991 * 109.47059 * 304.02633 * 3 2 1 26 26 H 1.09002 * 109.46905 * 64.02688 * 3 2 1 27 27 H 0.97001 * 119.99543 * 179.97438 * 9 8 6 28 28 H 1.09000 * 110.87601 * 35.77094 * 16 14 4 29 29 H 1.09001 * 111.05481 * 272.03192 * 16 14 4 30 30 H 1.09000 * 110.37580 * 204.18613 * 17 16 14 31 31 H 1.09007 * 110.37121 * 81.84621 * 17 16 14 32 32 H 1.00903 * 110.99754 * 146.36357 * 18 17 16 33 33 H 1.09007 * 109.88837 * 118.41662 * 19 18 17 34 34 H 1.08999 * 109.88826 * 239.44429 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6285 -1.7302 1.2796 6 6 1.6066 0.0353 2.4783 7 1 1.9009 1.0661 2.6096 8 6 0.8342 -0.5884 3.4351 9 7 0.6024 0.0078 4.5842 10 14 0.1169 -2.2802 3.0992 11 1 1.0749 -3.3221 3.5485 12 1 -1.1618 -2.4315 3.8389 13 1 -0.1326 -2.4318 1.6432 14 6 3.5678 -0.7947 1.2078 15 1 4.0033 0.2043 1.2292 16 6 4.1120 -1.6558 2.3812 17 6 5.4590 -2.1589 1.8048 18 7 5.1887 -2.4033 0.3719 19 6 4.0432 -1.5707 -0.0384 20 1 -0.3632 0.5954 0.8375 21 1 -0.3633 0.4276 -0.9345 22 1 -0.3633 -1.0231 0.0969 23 1 1.8933 -0.5139 -0.8900 24 1 3.1276 1.4433 -0.0721 25 1 1.6191 1.9767 -0.8516 26 1 1.7368 1.9350 0.9239 27 1 0.0587 -0.4308 5.2572 28 1 3.4428 -2.4894 2.5942 29 1 4.2711 -1.0481 3.2720 30 1 5.7609 -3.0833 2.2972 31 1 6.2297 -1.3968 1.9210 32 1 6.0025 -2.2007 -0.1892 33 1 4.3526 -0.8711 -0.8151 34 1 3.2382 -2.2047 -0.4099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259851944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = -39.321218 kcal Electronic energy + Delta-G solvation = -13521.517972 eV Core-core repulsion = 11452.463481 eV Total energy + Delta-G solvation = -2069.054492 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.97118 -37.05047 -34.18158 -31.70550 -29.89112 -28.37189 -27.69820 -24.53365 -22.25193 -21.44755 -19.78185 -18.96680 -17.50512 -16.51907 -15.76169 -15.48115 -14.90818 -14.55475 -14.49276 -13.75549 -13.64343 -13.25712 -13.14421 -12.92982 -12.62238 -12.45145 -12.34011 -12.07056 -11.77813 -11.66911 -11.53783 -11.05758 -10.77130 -10.63406 -10.42065 -9.30471 -8.20083 -6.15883 1.32247 1.36469 1.43846 2.39208 3.16296 3.43859 3.92702 4.06137 4.20449 4.37394 4.42014 4.46487 4.55488 4.72270 4.82133 4.91786 4.97342 5.03737 5.12038 5.14282 5.18369 5.31101 5.33338 5.42659 5.57251 5.61902 5.66944 5.81024 5.92254 5.96653 6.46338 6.62316 6.89567 7.47237 8.96993 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.016756 C = 0.013106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.118995 B = 1670.613225 C = 2135.835229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.024 3.976 5 H 0.025 0.975 6 C -0.473 4.473 7 H 0.040 0.960 8 C 0.021 3.979 9 N -0.953 5.953 10 Si 0.913 3.087 11 H -0.278 1.278 12 H -0.298 1.298 13 H -0.241 1.241 14 C -0.091 4.091 15 H 0.062 0.938 16 C -0.117 4.117 17 C 0.051 3.949 18 N -0.691 5.691 19 C 0.054 3.946 20 H 0.037 0.963 21 H 0.061 0.939 22 H 0.036 0.964 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.259 0.741 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.347 0.653 33 H 0.064 0.936 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.393 -2.947 -10.079 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 C -0.186 4.186 4 C 0.004 3.996 5 H 0.043 0.957 6 C -0.511 4.511 7 H 0.058 0.942 8 C -0.175 4.175 9 N -0.595 5.595 10 Si 0.740 3.260 11 H -0.204 1.204 12 H -0.225 1.225 13 H -0.165 1.165 14 C -0.111 4.111 15 H 0.080 0.920 16 C -0.155 4.155 17 C -0.078 4.078 18 N -0.322 5.322 19 C -0.075 4.075 20 H 0.057 0.943 21 H 0.080 0.920 22 H 0.055 0.945 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.164 0.836 33 H 0.083 0.917 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.935 -3.568 -9.837 12.030 hybrid contribution -0.328 0.318 0.723 0.855 sum 5.606 -3.251 -9.114 11.183 Atomic orbital electron populations 1.21738 0.96577 1.00319 1.00618 1.21159 0.95143 0.96646 0.97521 1.21691 1.00064 0.96296 1.00547 1.19262 0.91641 0.95053 0.93617 0.95703 1.21092 1.29439 0.98033 1.02566 0.94209 1.25667 0.97178 1.00119 0.94567 1.70058 1.41596 1.40861 1.06991 0.86288 0.77940 0.82066 0.79668 1.20410 1.22503 1.16470 1.22434 0.97515 0.97521 0.93581 0.91973 1.22571 0.96151 0.98468 0.98295 1.22802 0.96086 0.99962 0.88917 1.61832 1.09078 1.57381 1.03877 1.22665 0.93714 0.94435 0.96726 0.94344 0.91965 0.94532 0.91541 0.93096 0.92594 0.94481 0.93209 0.93895 0.92697 0.90273 0.92814 0.83645 0.91726 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 8.89 71.98 0.64 -4.48 16 2 C -0.09 -3.21 2.54 -10.79 -0.03 -3.23 16 3 C -0.13 -4.54 8.60 71.98 0.62 -3.92 16 4 C 0.02 1.02 0.95 -11.54 -0.01 1.01 16 5 H 0.02 1.14 4.66 -2.39 -0.01 1.13 16 6 C -0.47 -25.21 6.63 25.60 0.17 -25.04 16 7 H 0.04 2.37 6.78 -2.91 -0.02 2.35 16 8 C 0.02 1.17 5.47 84.66 0.46 1.63 16 9 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 10 Si 0.91 44.59 27.10 68.60 1.86 46.45 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 13 H -0.24 -10.88 5.50 99.48 0.55 -10.33 16 14 C -0.09 -3.45 2.09 -9.52 -0.02 -3.47 16 15 H 0.06 2.40 6.84 -2.39 -0.02 2.38 16 16 C -0.12 -4.55 6.09 32.07 0.20 -4.35 16 17 C 0.05 1.53 7.58 86.77 0.66 2.19 16 18 N -0.69 -19.77 7.39 -504.42 -3.73 -23.50 16 19 C 0.05 1.66 6.11 86.65 0.53 2.19 16 20 H 0.04 1.65 7.51 -2.39 -0.02 1.63 16 21 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.04 1.39 7.03 -2.38 -0.02 1.38 16 23 H 0.07 2.16 6.96 -2.39 -0.02 2.14 16 24 H 0.05 1.65 6.81 -2.39 -0.02 1.63 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.53 6.28 -2.39 -0.01 1.52 16 27 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.04 1.84 8.03 -2.39 -0.02 1.82 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.35 7.83 8.91 -89.69 -0.80 7.03 16 33 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.06 2.06 7.49 -2.39 -0.02 2.05 16 Total: -1.00 -61.24 257.57 1.75 -59.49 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.11 Total: 13.70 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 3.22 Total: -37.46 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -3.43 Total: -82.18 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.86 Total: 46.45 kcal Total: -61.24 1.75 -59.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259851944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.168 kcal (2) G-P(sol) polarization free energy of solvation -61.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds