Wall clock time and date at job start Mon Mar 30 2020 02:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 C 1.53002 * 109.46596 * 119.99394 * 2 1 3 5 5 H 1.09007 * 109.47327 * 185.93332 * 4 2 1 6 6 C 1.50709 * 109.47223 * 65.93851 * 4 2 1 7 7 H 1.07996 * 119.99929 * 245.12650 * 6 4 2 8 8 C 1.37871 * 119.99808 * 65.40037 * 6 4 2 9 9 N 1.31514 * 120.00071 * 191.47289 * 8 6 4 10 10 Si 1.86806 * 120.00273 * 11.47488 * 8 6 4 11 11 H 1.48491 * 109.46981 * 91.91387 * 10 8 6 12 12 H 1.48501 * 109.46989 * 211.91530 * 10 8 6 13 13 H 1.48496 * 109.47027 * 331.91441 * 10 8 6 14 14 C 1.52998 * 109.47352 * 305.93733 * 4 2 1 15 15 H 1.08995 * 110.64405 * 56.53155 * 14 4 2 16 16 C 1.54595 * 110.72373 * 293.37606 * 14 4 2 17 17 C 1.53988 * 105.13927 * 219.68137 * 16 14 4 18 18 N 1.47897 * 107.06146 * 358.78138 * 17 16 14 19 19 C 1.48532 * 105.82222 * 25.32563 * 18 17 16 20 20 H 1.08993 * 109.47644 * 306.38694 * 1 2 3 21 21 H 1.09009 * 109.46483 * 66.39158 * 1 2 3 22 22 H 1.08996 * 109.46996 * 186.37963 * 1 2 3 23 23 H 1.09000 * 109.47438 * 239.99369 * 2 1 3 24 24 H 1.08999 * 109.46357 * 288.13846 * 3 2 1 25 25 H 1.09000 * 109.46746 * 48.13452 * 3 2 1 26 26 H 1.08991 * 109.47251 * 168.13420 * 3 2 1 27 27 H 0.96999 * 120.00225 * 180.02562 * 9 8 6 28 28 H 1.08995 * 110.30759 * 338.60607 * 16 14 4 29 29 H 1.09004 * 110.30715 * 100.66787 * 16 14 4 30 30 H 1.09011 * 109.91390 * 118.12959 * 17 16 14 31 31 H 1.09000 * 109.92086 * 239.42112 * 17 16 14 32 32 H 1.00904 * 111.00358 * 145.84516 * 18 17 16 33 33 H 1.09000 * 110.66577 * 202.36280 * 19 18 17 34 34 H 1.09001 * 110.66602 * 79.22971 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1248 -0.6301 1.3042 6 6 1.6611 -2.1781 1.1782 7 1 0.9689 -2.5918 1.8966 8 6 2.2026 -2.9841 0.1995 9 7 1.7116 -4.1863 -0.0085 10 14 3.6339 -2.3688 -0.8312 11 1 4.9127 -2.7748 -0.1949 12 1 3.5509 -2.9544 -2.1933 13 1 3.5759 -0.8879 -0.9247 14 6 1.4117 -0.0911 2.4941 15 1 0.3239 -0.1170 2.4305 16 6 1.9141 1.3582 2.6865 17 6 2.1239 1.5129 4.2042 18 7 1.7307 0.2316 4.8294 19 6 1.9068 -0.8028 3.7782 20 1 -0.3634 0.6096 0.8272 21 1 -0.3632 0.4116 -0.9418 22 1 -0.3633 -1.0213 0.1142 23 1 1.8934 -0.5139 -0.8899 24 1 1.8595 1.8916 -0.9766 25 1 1.5145 2.0136 0.7653 26 1 3.1093 1.4498 0.2113 27 1 2.0928 -4.7535 -0.6968 28 1 2.8556 1.5055 2.1574 29 1 1.1666 2.0680 2.3320 30 1 3.1728 1.7223 4.4146 31 1 1.4978 2.3197 4.5852 32 1 2.3051 0.0307 5.6343 33 1 1.2940 -1.6782 3.9935 34 1 2.9566 -1.0805 3.6837 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259852976.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:43 Heat of formation + Delta-G solvation = -25.483789 kcal Electronic energy + Delta-G solvation = -13580.183276 eV Core-core repulsion = 11511.728820 eV Total energy + Delta-G solvation = -2068.454456 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.22463 -36.98923 -34.28427 -31.31340 -30.52775 -28.21628 -27.77023 -24.43130 -22.29480 -21.43416 -20.10372 -18.49896 -17.24924 -16.67954 -16.19897 -15.20501 -14.96231 -14.71339 -14.28588 -14.19573 -13.76291 -13.17641 -12.99325 -12.87036 -12.64702 -12.32924 -12.19637 -12.05708 -11.66413 -11.50967 -11.33562 -11.09043 -10.79077 -10.57058 -10.40226 -9.38561 -8.22111 -6.19110 1.34029 1.38736 1.47903 2.40326 3.13669 3.47361 3.97737 4.02232 4.12116 4.41007 4.46075 4.50271 4.57671 4.77689 4.90209 4.92184 4.99467 5.04687 5.06944 5.10381 5.17406 5.28486 5.31797 5.37080 5.57993 5.65556 5.70840 5.79144 5.90619 5.99622 6.42728 6.55932 6.86570 7.43923 8.94770 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.034981 B = 0.014399 C = 0.012525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.234712 B = 1944.075037 C = 2234.907584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C -0.153 4.153 4 C 0.033 3.967 5 H 0.016 0.984 6 C -0.495 4.495 7 H 0.031 0.969 8 C 0.014 3.986 9 N -0.951 5.951 10 Si 0.916 3.084 11 H -0.283 1.283 12 H -0.296 1.296 13 H -0.217 1.217 14 C -0.068 4.068 15 H 0.062 0.938 16 C -0.128 4.128 17 C 0.038 3.962 18 N -0.683 5.683 19 C 0.057 3.943 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.031 0.969 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.260 0.740 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.340 0.660 33 H 0.054 0.946 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 13.486 3.599 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.120 4.120 3 C -0.210 4.210 4 C 0.014 3.986 5 H 0.034 0.966 6 C -0.533 4.533 7 H 0.049 0.951 8 C -0.183 4.183 9 N -0.592 5.592 10 Si 0.741 3.259 11 H -0.210 1.210 12 H -0.223 1.223 13 H -0.140 1.140 14 C -0.087 4.087 15 H 0.080 0.920 16 C -0.166 4.166 17 C -0.091 4.091 18 N -0.312 5.312 19 C -0.072 4.072 20 H 0.078 0.922 21 H 0.068 0.932 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.156 0.844 33 H 0.072 0.928 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.782 13.441 3.450 13.991 hybrid contribution 1.507 -1.022 -0.676 1.942 sum 3.289 12.419 2.774 13.143 Atomic orbital electron populations 1.21652 0.95596 1.00581 1.00480 1.21485 0.96247 0.95939 0.98347 1.22314 1.00650 0.95852 1.02169 1.19113 0.94571 0.92784 0.92153 0.96562 1.21229 1.25223 0.94109 1.12732 0.95081 1.25759 0.99275 0.94976 0.98246 1.70107 1.42817 1.11563 1.34748 0.86378 0.80009 0.81842 0.77630 1.20983 1.22262 1.13971 1.21862 0.99434 0.93952 0.93444 0.91984 1.22895 1.01870 0.96523 0.95271 1.22771 0.99262 0.92673 0.94436 1.63062 1.57579 1.02679 1.07895 1.22796 0.98254 0.94569 0.91631 0.92199 0.93211 0.94978 0.94199 0.93074 0.89860 0.93313 0.93139 0.90748 0.89716 0.93355 0.89617 0.84409 0.92752 0.95151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.38 71.98 0.60 -4.19 16 2 C -0.10 -4.01 1.91 -10.79 -0.02 -4.03 16 3 C -0.15 -4.67 7.67 71.98 0.55 -4.11 16 4 C 0.03 1.44 0.74 -11.54 -0.01 1.43 16 5 H 0.02 0.73 6.77 -2.38 -0.02 0.71 16 6 C -0.49 -27.21 7.36 25.60 0.19 -27.02 16 7 H 0.03 1.92 7.61 -2.91 -0.02 1.90 16 8 C 0.01 0.78 5.38 84.65 0.46 1.24 16 9 N -0.95 -59.69 13.96 21.44 0.30 -59.39 16 10 Si 0.92 43.59 25.76 68.60 1.77 45.35 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 13 H -0.22 -9.20 5.28 99.48 0.53 -8.68 16 14 C -0.07 -2.56 2.11 -9.59 -0.02 -2.58 16 15 H 0.06 2.51 6.36 -2.39 -0.02 2.49 16 16 C -0.13 -3.68 4.47 31.47 0.14 -3.54 16 17 C 0.04 0.97 7.51 86.45 0.65 1.62 16 18 N -0.68 -20.67 7.51 -502.20 -3.77 -24.44 16 19 C 0.06 2.13 6.27 86.65 0.54 2.67 16 20 H 0.06 2.03 6.59 -2.39 -0.02 2.02 16 21 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 22 H 0.03 1.44 7.23 -2.39 -0.02 1.42 16 23 H 0.04 1.74 4.68 -2.39 -0.01 1.73 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 2.21 4.61 -2.39 -0.01 2.20 16 26 H 0.05 1.45 7.29 -2.39 -0.02 1.43 16 27 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.07 2.08 6.00 -2.39 -0.01 2.07 16 29 H 0.08 2.15 6.57 -2.39 -0.02 2.13 16 30 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.34 8.77 8.92 -89.69 -0.80 7.97 16 33 H 0.05 2.29 7.88 -2.39 -0.02 2.27 16 34 H 0.03 1.17 8.05 -2.39 -0.02 1.16 16 Total: -1.00 -63.16 247.95 1.47 -61.69 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.10 Total: 15.29 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.08 Total: -38.51 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -3.47 Total: -83.83 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.77 Total: 45.35 kcal Total: -63.16 1.47 -61.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259852976.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.204 kcal (2) G-P(sol) polarization free energy of solvation -63.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds