Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47005 * 2 1 4 4 C 1.52996 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.45789 * 305.01428 * 4 3 2 6 6 C 1.53037 * 109.46439 * 185.05257 * 4 3 2 7 7 C 1.53114 * 109.28105 * 180.80262 * 6 4 3 8 8 H 1.09002 * 109.57394 * 297.71647 * 7 6 4 9 9 C 1.50696 * 109.52210 * 177.55645 * 7 6 4 10 10 H 1.07997 * 120.00440 * 325.13870 * 9 7 6 11 11 C 1.37881 * 119.99643 * 145.14151 * 9 7 6 12 12 N 1.31518 * 120.00001 * 178.66462 * 11 9 7 13 13 Si 1.86800 * 120.00314 * 358.66125 * 11 9 7 14 14 H 1.48493 * 109.47330 * 268.17008 * 13 11 9 15 15 H 1.48502 * 109.46637 * 28.16980 * 13 11 9 16 16 H 1.48500 * 109.47172 * 148.16190 * 13 11 9 17 17 C 1.53116 * 109.16117 * 57.65131 * 7 6 4 18 18 C 1.53045 * 109.27848 * 302.34655 * 17 7 6 19 19 N 1.46843 * 109.46249 * 64.99393 * 4 3 2 20 20 H 1.08995 * 109.47561 * 300.00293 * 1 2 3 21 21 H 1.09007 * 109.46995 * 60.00978 * 1 2 3 22 22 H 1.09003 * 109.47158 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47561 * 239.99707 * 2 1 3 24 24 H 1.09008 * 109.46553 * 119.99315 * 2 1 3 25 25 H 1.09002 * 109.47344 * 59.99129 * 3 2 1 26 26 H 1.09007 * 109.46445 * 299.99358 * 3 2 1 27 27 H 1.09001 * 109.50168 * 60.85667 * 6 4 3 28 28 H 1.09002 * 109.50128 * 300.74620 * 6 4 3 29 29 H 0.96995 * 120.00080 * 179.97438 * 12 11 9 30 30 H 1.08996 * 109.50695 * 62.28708 * 17 7 6 31 31 H 1.09003 * 109.50507 * 182.40782 * 17 7 6 32 32 H 1.09001 * 109.46234 * 179.19352 * 18 17 7 33 33 H 1.09004 * 109.46299 * 299.17627 * 18 17 7 34 34 H 1.00901 * 111.00464 * 305.85368 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9327 0.8531 0.8426 6 6 4.0798 2.8800 0.1277 7 6 5.6108 2.8770 0.1078 8 1 5.9861 2.3165 0.9640 9 6 6.1180 4.2945 0.1722 10 1 5.5703 5.0868 -0.3163 11 6 7.2815 4.5800 0.8549 12 7 7.7382 5.8129 0.8891 13 14 8.2089 3.2158 1.7313 14 1 7.7442 3.1263 3.1389 15 1 7.9560 1.9243 1.0435 16 1 9.6639 3.5122 1.7082 17 6 6.0953 2.2185 -1.1869 18 6 5.5270 0.8003 -1.2758 19 7 4.0598 0.8572 -1.2538 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6765 1.9564 0.8899 26 1 1.6767 1.9562 -0.8901 27 1 3.7288 3.3089 1.0663 28 1 3.7061 3.4737 -0.7065 29 1 8.5565 6.0138 1.3696 30 1 5.7534 2.8017 -2.0419 31 1 7.1844 2.1749 -1.1876 32 1 5.8585 0.3337 -2.2035 33 1 5.8803 0.2136 -0.4278 34 1 3.6602 -0.0566 -1.4067 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259853192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = -31.379169 kcal Electronic energy + Delta-G solvation = -12991.315532 eV Core-core repulsion = 10922.605434 eV Total energy + Delta-G solvation = -2068.710099 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.38708 -34.77753 -32.87560 -30.92918 -30.49041 -26.19562 -25.35982 -21.90751 -21.68274 -20.07331 -18.70718 -16.74093 -15.92101 -15.32647 -14.26392 -13.83764 -13.73219 -13.28628 -13.01820 -12.47030 -12.30937 -12.08086 -11.69694 -11.47722 -11.02919 -10.94392 -10.89271 -10.50264 -10.46472 -10.24760 -9.75479 -9.50773 -9.07474 -8.85881 -8.47610 -7.92063 -6.02734 -4.00545 3.29627 3.38440 3.41234 4.45740 4.66024 4.97858 5.08566 5.19764 5.29163 5.63266 5.67819 5.77183 5.82590 5.87716 5.94259 6.01259 6.13504 6.23974 6.31439 6.35986 6.43540 6.55622 6.60455 6.84972 6.96552 7.09457 7.39082 7.53715 7.67669 7.80789 7.93165 8.60078 9.03572 9.61273 11.11059 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051753 B = 0.009039 C = 0.008657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.904335 B = 3096.945922 C = 3233.669407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.114 4.114 4 C 0.084 3.916 5 H 0.027 0.973 6 C -0.093 4.093 7 C 0.013 3.987 8 H 0.025 0.975 9 C -0.506 4.506 10 H 0.072 0.928 11 C 0.068 3.932 12 N -0.904 5.904 13 Si 0.876 3.124 14 H -0.279 1.279 15 H -0.264 1.264 16 H -0.290 1.290 17 C -0.108 4.108 18 C 0.056 3.944 19 N -0.682 5.682 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.262 0.738 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.017 0.983 34 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -11.876 -1.446 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.025 4.025 5 H 0.045 0.955 6 C -0.132 4.132 7 C -0.006 4.006 8 H 0.043 0.957 9 C -0.544 4.544 10 H 0.090 0.910 11 C -0.133 4.133 12 N -0.543 5.543 13 Si 0.704 3.296 14 H -0.205 1.205 15 H -0.188 1.188 16 H -0.216 1.216 17 C -0.146 4.146 18 C -0.073 4.073 19 N -0.314 5.314 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.114 -11.153 -1.713 14.505 hybrid contribution 0.847 -1.389 1.151 1.993 sum -8.267 -12.542 -0.562 15.032 Atomic orbital electron populations 1.21755 0.96130 1.01062 1.01773 1.21576 0.95664 0.97781 1.01442 1.21697 0.95067 0.96015 1.02373 1.21653 0.93539 0.97653 0.89677 0.95461 1.21633 0.98020 0.92595 1.00908 1.19200 0.91832 0.96608 0.92990 0.95688 1.21045 1.08152 0.92019 1.33148 0.90980 1.25078 0.97010 0.95141 0.96071 1.69913 1.22509 1.18690 1.43176 0.86863 0.79010 0.83381 0.80332 1.20544 1.18840 1.21608 1.21865 0.98822 0.92731 1.01195 1.22053 0.87322 0.99185 0.98747 1.60374 1.07599 1.27204 1.36224 0.92895 0.92722 0.93253 0.92045 0.92632 0.91762 0.91177 0.92638 0.92134 0.92817 0.92025 0.93022 0.92232 0.96445 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.12 16 2 C -0.13 -1.46 5.71 -26.73 -0.15 -1.62 16 3 C -0.11 -1.59 4.89 -26.73 -0.13 -1.72 16 4 C 0.08 1.44 2.50 -67.73 -0.17 1.27 16 5 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 6 C -0.09 -1.94 4.64 -26.65 -0.12 -2.06 16 7 C 0.01 0.30 1.74 -91.65 -0.16 0.15 16 8 H 0.02 0.61 5.31 -51.93 -0.28 0.34 16 9 C -0.51 -14.38 8.87 -34.44 -0.31 -14.68 16 10 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 13 Si 0.88 21.91 26.93 -169.99 -4.58 17.33 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.26 -6.31 6.55 56.52 0.37 -5.94 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 C -0.11 -2.34 5.35 -26.65 -0.14 -2.48 16 18 C 0.06 1.00 6.55 -3.83 -0.03 0.98 16 19 N -0.68 -11.30 6.50 -106.76 -0.69 -11.99 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.68 6.64 -51.93 -0.34 0.34 16 24 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.33 4.56 7.00 -39.29 -0.28 4.29 16 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -29.88 264.67 -7.41 -37.30 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.97 Total: 0.04 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -0.94 Total: -19.42 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.08 Total: -39.24 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.58 Total: 17.33 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.88 -7.41 -37.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.917 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds