Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47005 * 2 1 4 4 C 1.52996 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.45789 * 305.01428 * 4 3 2 6 6 C 1.53037 * 109.46439 * 185.05257 * 4 3 2 7 7 C 1.53114 * 109.28105 * 180.80262 * 6 4 3 8 8 H 1.09002 * 109.57394 * 297.71647 * 7 6 4 9 9 C 1.50696 * 109.52210 * 177.55645 * 7 6 4 10 10 H 1.07997 * 120.00440 * 325.13870 * 9 7 6 11 11 C 1.37881 * 119.99643 * 145.14151 * 9 7 6 12 12 N 1.31518 * 120.00001 * 178.66462 * 11 9 7 13 13 Si 1.86800 * 120.00314 * 358.66125 * 11 9 7 14 14 H 1.48493 * 109.47330 * 268.17008 * 13 11 9 15 15 H 1.48502 * 109.46637 * 28.16980 * 13 11 9 16 16 H 1.48500 * 109.47172 * 148.16190 * 13 11 9 17 17 C 1.53116 * 109.16117 * 57.65131 * 7 6 4 18 18 C 1.53045 * 109.27848 * 302.34655 * 17 7 6 19 19 N 1.46843 * 109.46249 * 64.99393 * 4 3 2 20 20 H 1.08995 * 109.47561 * 300.00293 * 1 2 3 21 21 H 1.09007 * 109.46995 * 60.00978 * 1 2 3 22 22 H 1.09003 * 109.47158 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47561 * 239.99707 * 2 1 3 24 24 H 1.09008 * 109.46553 * 119.99315 * 2 1 3 25 25 H 1.09002 * 109.47344 * 59.99129 * 3 2 1 26 26 H 1.09007 * 109.46445 * 299.99358 * 3 2 1 27 27 H 1.09001 * 109.50168 * 60.85667 * 6 4 3 28 28 H 1.09002 * 109.50128 * 300.74620 * 6 4 3 29 29 H 0.96995 * 120.00080 * 179.97438 * 12 11 9 30 30 H 1.08996 * 109.50695 * 62.28708 * 17 7 6 31 31 H 1.09003 * 109.50507 * 182.40782 * 17 7 6 32 32 H 1.09001 * 109.46234 * 179.19352 * 18 17 7 33 33 H 1.09004 * 109.46299 * 299.17627 * 18 17 7 34 34 H 1.00901 * 111.00464 * 305.85368 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9327 0.8531 0.8426 6 6 4.0798 2.8800 0.1277 7 6 5.6108 2.8770 0.1078 8 1 5.9861 2.3165 0.9640 9 6 6.1180 4.2945 0.1722 10 1 5.5703 5.0868 -0.3163 11 6 7.2815 4.5800 0.8549 12 7 7.7382 5.8129 0.8891 13 14 8.2089 3.2158 1.7313 14 1 7.7442 3.1263 3.1389 15 1 7.9560 1.9243 1.0435 16 1 9.6639 3.5122 1.7082 17 6 6.0953 2.2185 -1.1869 18 6 5.5270 0.8003 -1.2758 19 7 4.0598 0.8572 -1.2538 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6765 1.9564 0.8899 26 1 1.6767 1.9562 -0.8901 27 1 3.7288 3.3089 1.0663 28 1 3.7061 3.4737 -0.7065 29 1 8.5565 6.0138 1.3696 30 1 5.7534 2.8017 -2.0419 31 1 7.1844 2.1749 -1.1876 32 1 5.8585 0.3337 -2.2035 33 1 5.8803 0.2136 -0.4278 34 1 3.6602 -0.0566 -1.4067 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259853192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = -51.161326 kcal Electronic energy + Delta-G solvation = -12992.173351 eV Core-core repulsion = 10922.605434 eV Total energy + Delta-G solvation = -2069.567917 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87677 -36.11469 -34.70372 -32.79989 -31.80124 -27.72200 -27.02602 -23.49316 -22.97557 -21.37308 -20.44416 -18.89829 -17.37132 -16.47527 -16.24221 -15.12379 -15.06462 -14.84899 -14.52295 -14.35504 -13.60144 -13.38220 -13.22170 -12.87642 -12.72253 -12.54201 -12.18398 -12.00886 -11.85117 -11.67191 -11.42367 -11.30441 -10.97770 -10.66699 -10.61764 -9.27246 -8.29019 -6.31946 1.31726 1.33337 1.45522 2.34105 3.06466 3.34143 3.91006 4.08804 4.17909 4.29032 4.37600 4.43505 4.53209 4.67495 4.76670 4.81617 4.89444 4.96814 4.98913 5.05443 5.16914 5.22264 5.30251 5.38892 5.43550 5.51966 5.62465 5.68274 5.76391 6.21313 6.34623 6.68512 6.76346 7.33304 8.88622 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.051753 B = 0.009039 C = 0.008657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.904335 B = 3096.945922 C = 3233.669407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.108 4.108 4 C 0.091 3.909 5 H 0.031 0.969 6 C -0.091 4.091 7 C 0.009 3.991 8 H 0.026 0.974 9 C -0.513 4.513 10 H 0.026 0.974 11 C 0.007 3.993 12 N -0.954 5.954 13 Si 0.944 3.056 14 H -0.270 1.270 15 H -0.242 1.242 16 H -0.286 1.286 17 C -0.107 4.107 18 C 0.063 3.937 19 N -0.684 5.684 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.265 0.735 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.024 0.976 34 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -15.024 -1.217 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.146 4.146 4 C -0.018 4.018 5 H 0.048 0.952 6 C -0.129 4.129 7 C -0.010 4.010 8 H 0.044 0.956 9 C -0.551 4.551 10 H 0.044 0.956 11 C -0.189 4.189 12 N -0.595 5.595 13 Si 0.768 3.232 14 H -0.195 1.195 15 H -0.166 1.166 16 H -0.213 1.213 17 C -0.145 4.145 18 C -0.066 4.066 19 N -0.318 5.318 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.791 -14.328 -1.500 17.418 hybrid contribution 0.996 -0.290 1.024 1.458 sum -8.795 -14.618 -0.476 17.066 Atomic orbital electron populations 1.21738 0.94917 1.02068 1.01852 1.21531 0.96700 0.95683 1.02009 1.21633 0.92674 0.98061 1.02218 1.21521 0.95514 0.94682 0.90120 0.95157 1.21531 0.95956 0.95521 0.99938 1.19213 0.93874 0.93682 0.94203 0.95615 1.21342 1.07860 0.93590 1.32268 0.95598 1.25993 0.98105 0.97745 0.97085 1.70072 1.23404 1.21243 1.44769 0.85771 0.77367 0.80719 0.79323 1.19547 1.16584 1.21253 1.21726 0.98450 0.95270 0.99066 1.21928 0.87947 0.96198 1.00510 1.60267 1.06960 1.28767 1.35823 0.92835 0.92722 0.91793 0.91307 0.92190 0.91646 0.91748 0.93295 0.93787 0.92648 0.93579 0.93910 0.89504 0.95759 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.12 -2.39 5.71 30.60 0.17 -2.21 16 3 C -0.11 -2.77 4.89 30.59 0.15 -2.62 16 4 C 0.09 2.91 2.50 44.94 0.11 3.02 16 5 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 6 C -0.09 -3.78 4.64 30.64 0.14 -3.64 16 7 C 0.01 0.44 1.74 -11.46 -0.02 0.42 16 8 H 0.03 1.22 5.31 -2.39 -0.01 1.21 16 9 C -0.51 -30.16 8.87 25.60 0.23 -29.94 16 10 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 11 C 0.01 0.41 5.47 84.66 0.46 0.87 16 12 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 13 Si 0.94 45.09 26.93 68.60 1.85 46.94 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.24 -10.65 6.55 99.48 0.65 -10.00 16 16 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 17 C -0.11 -4.53 5.35 30.65 0.16 -4.37 16 18 C 0.06 2.07 6.55 86.33 0.57 2.63 16 19 N -0.68 -20.55 6.50 -491.67 -3.20 -23.74 16 20 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 21 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 1.26 6.64 -2.39 -0.02 1.24 16 24 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.86 7.87 -2.39 -0.02 1.84 16 32 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.35 8.26 7.00 -89.69 -0.63 7.63 16 Total: -1.00 -65.87 264.67 2.00 -63.87 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.36 Total: 11.33 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 2.69 Total: -37.60 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -2.90 Total: -84.53 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.85 Total: 46.94 kcal Total: -65.87 2.00 -63.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.707 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds