Wall clock time and date at job start Mon Mar 30 2020 02:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47042 * 2 1 4 4 C 1.53002 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46546 * 304.97779 * 4 3 2 6 6 C 1.53037 * 109.46087 * 184.99413 * 4 3 2 7 7 C 1.53126 * 109.27801 * 180.81557 * 6 4 3 8 8 H 1.08998 * 109.52297 * 177.56592 * 7 6 4 9 9 C 1.50703 * 109.52204 * 297.75540 * 7 6 4 10 10 H 1.07998 * 119.99998 * 359.97438 * 9 7 6 11 11 C 1.37869 * 119.99762 * 180.02562 * 9 7 6 12 12 N 1.31511 * 120.00450 * 359.97438 * 11 9 7 13 13 Si 1.86804 * 119.99979 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47103 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47632 * 119.99640 * 13 11 9 16 16 H 1.48501 * 109.46849 * 239.99769 * 13 11 9 17 17 C 1.53124 * 109.15878 * 57.65645 * 7 6 4 18 18 C 1.53035 * 109.27794 * 302.34791 * 17 7 6 19 19 N 1.46844 * 109.52494 * 59.18054 * 18 17 7 20 20 H 1.09002 * 109.47395 * 60.00439 * 1 2 3 21 21 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47732 * 300.00485 * 1 2 3 23 23 H 1.08996 * 109.47734 * 240.00072 * 2 1 3 24 24 H 1.09002 * 109.47395 * 119.99561 * 2 1 3 25 25 H 1.08993 * 109.47504 * 59.99670 * 3 2 1 26 26 H 1.08998 * 109.46909 * 299.99543 * 3 2 1 27 27 H 1.09000 * 109.50480 * 60.88073 * 6 4 3 28 28 H 1.09002 * 109.53848 * 300.77788 * 6 4 3 29 29 H 0.97000 * 120.00148 * 180.02562 * 12 11 9 30 30 H 1.08999 * 109.50059 * 62.28737 * 17 7 6 31 31 H 1.08993 * 109.49981 * 182.40384 * 17 7 6 32 32 H 1.09002 * 109.46466 * 299.16376 * 18 17 7 33 33 H 1.09002 * 109.45306 * 179.19059 * 18 17 7 34 34 H 1.00903 * 110.99984 * 174.16441 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9328 0.8536 0.8429 6 6 4.0797 2.8801 0.1263 7 6 5.6108 2.8771 0.1060 8 1 5.9777 3.9024 0.1517 9 6 6.1286 2.1022 1.2903 10 1 5.4359 1.6564 1.9886 11 6 7.4867 1.9635 1.4828 12 7 8.3304 2.5068 0.6328 13 14 8.1287 1.0024 2.9505 14 1 6.9840 0.4952 3.7490 15 1 8.9460 -0.1421 2.4737 16 1 8.9663 1.8907 3.7958 17 6 6.0950 2.2175 -1.1883 18 6 5.5267 0.7993 -1.2759 19 7 4.0595 0.8562 -1.2536 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6766 1.9563 -0.8900 27 1 3.7291 3.3098 1.0646 28 1 3.7058 3.4736 -0.7080 29 1 9.2859 2.4088 0.7681 30 1 5.7528 2.8001 -2.0437 31 1 7.1840 2.1739 -1.1891 32 1 5.8804 0.2132 -0.4275 33 1 5.8580 0.3321 -2.2033 34 1 3.6599 -0.0578 -1.4056 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259853197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:06 Heat of formation + Delta-G solvation = -46.886738 kcal Electronic energy + Delta-G solvation = -13228.153750 eV Core-core repulsion = 11158.771193 eV Total energy + Delta-G solvation = -2069.382557 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.84142 -36.10791 -34.41887 -32.39459 -31.52744 -27.50165 -26.87061 -23.96792 -22.88261 -21.40805 -20.44033 -17.76869 -17.19312 -16.61456 -16.27641 -15.06346 -14.97565 -14.76239 -14.31876 -13.98952 -13.47778 -13.44061 -13.05801 -12.86960 -12.66624 -12.41412 -12.16310 -11.96185 -11.86289 -11.62440 -11.40658 -11.00121 -10.86690 -10.64869 -10.31794 -9.14648 -8.07698 -6.19063 1.36083 1.38814 1.48772 2.41628 3.19686 3.48375 3.99159 4.17479 4.21400 4.49619 4.56082 4.59855 4.65581 4.82593 4.88474 4.93489 5.00905 5.08100 5.15303 5.21818 5.31365 5.38809 5.39694 5.47287 5.53848 5.61953 5.66509 5.84421 6.03227 6.37885 6.42443 6.78634 6.91421 7.47198 8.97562 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041619 B = 0.010470 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.608063 B = 2673.639069 C = 2954.568384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.106 4.106 4 C 0.101 3.899 5 H 0.019 0.981 6 C -0.094 4.094 7 C 0.034 3.966 8 H -0.013 1.013 9 C -0.511 4.511 10 H 0.048 0.952 11 C 0.013 3.987 12 N -0.918 5.918 13 Si 0.945 3.055 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.101 4.101 18 C 0.082 3.918 19 N -0.679 5.679 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.259 0.741 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.064 0.936 34 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -5.167 -1.695 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.008 4.008 5 H 0.037 0.963 6 C -0.132 4.132 7 C 0.016 3.984 8 H 0.005 0.995 9 C -0.550 4.550 10 H 0.067 0.933 11 C -0.185 4.185 12 N -0.558 5.558 13 Si 0.771 3.229 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.139 4.139 18 C -0.047 4.047 19 N -0.312 5.312 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.031 -4.557 -2.060 12.112 hybrid contribution 1.151 -0.886 1.412 2.025 sum -9.880 -5.443 -0.648 11.298 Atomic orbital electron populations 1.21715 0.94457 1.02044 1.02008 1.21534 0.96980 0.96097 1.01582 1.21642 0.92841 0.97743 1.02149 1.21322 0.94581 0.95021 0.89922 0.96268 1.21526 0.96544 0.95989 0.99143 1.18750 0.91722 0.94154 0.93802 0.99485 1.21410 0.91482 1.32898 1.09170 0.93349 1.25664 0.97450 0.96776 0.98600 1.70017 1.02285 1.46099 1.37409 0.85701 0.78355 0.78651 0.80159 1.19370 1.20696 1.20753 1.21402 1.00937 0.95136 0.96431 1.21602 0.87556 0.97201 0.98389 1.60441 1.07032 1.27963 1.35752 0.92314 0.91959 0.92715 0.91623 0.93036 0.91710 0.91238 0.93450 0.93312 0.93172 0.95472 0.92016 0.96940 0.91712 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.91 71.98 0.71 -2.07 16 2 C -0.12 -2.99 5.71 30.59 0.17 -2.81 16 3 C -0.11 -3.06 4.89 30.60 0.15 -2.91 16 4 C 0.10 3.81 2.29 44.94 0.10 3.92 16 5 H 0.02 0.83 6.78 -2.39 -0.02 0.81 16 6 C -0.09 -4.05 4.83 30.65 0.15 -3.90 16 7 C 0.03 1.78 2.60 -11.46 -0.03 1.75 16 8 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 9 C -0.51 -28.25 6.74 25.60 0.17 -28.08 16 10 H 0.05 2.66 6.86 -2.91 -0.02 2.64 16 11 C 0.01 0.74 5.30 84.65 0.45 1.18 16 12 N -0.92 -53.68 11.33 21.44 0.24 -53.44 16 13 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 C -0.10 -4.97 5.41 30.65 0.17 -4.80 16 18 C 0.08 3.49 6.34 86.33 0.55 4.04 16 19 N -0.68 -24.93 6.50 -491.68 -3.20 -28.12 16 20 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 21 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.52 6.63 -2.39 -0.02 1.51 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 3.41 6.05 -2.39 -0.01 3.40 16 32 H 0.01 0.59 7.31 -2.39 -0.02 0.57 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.34 10.56 7.00 -89.69 -0.63 9.93 16 Total: -1.00 -59.68 261.23 2.09 -57.59 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.42 Total: 11.56 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 2.59 Total: -33.69 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -2.95 Total: -81.56 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -59.68 2.09 -57.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.699 kcal (2) G-P(sol) polarization free energy of solvation -59.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds