Wall clock time and date at job start Mon Mar 30 2020 02:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.53004 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.45454 * 54.97070 * 4 3 2 6 6 C 1.53036 * 109.46346 * 174.95092 * 4 3 2 7 7 C 1.53118 * 109.28007 * 179.19722 * 6 4 3 8 8 H 1.08996 * 109.51997 * 182.43867 * 7 6 4 9 9 C 1.50698 * 109.52489 * 62.31214 * 7 6 4 10 10 H 1.08003 * 119.99995 * 359.97438 * 9 7 6 11 11 C 1.37875 * 120.00049 * 180.02562 * 9 7 6 12 12 N 1.31516 * 119.99939 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 120.00007 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46969 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47077 * 119.99467 * 13 11 9 16 16 H 1.48501 * 109.47056 * 239.99401 * 13 11 9 17 17 C 1.53123 * 109.15585 * 302.34276 * 7 6 4 18 18 C 1.53030 * 109.28009 * 57.65675 * 17 7 6 19 19 N 1.46846 * 109.46281 * 295.00274 * 4 3 2 20 20 H 1.09004 * 109.47353 * 299.99666 * 1 2 3 21 21 H 1.09003 * 109.47564 * 59.99810 * 1 2 3 22 22 H 1.09004 * 109.46976 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47353 * 240.00334 * 2 1 3 24 24 H 1.08993 * 109.47556 * 120.00238 * 2 1 3 25 25 H 1.08999 * 109.47142 * 60.00319 * 3 2 1 26 26 H 1.08993 * 109.47407 * 299.99969 * 3 2 1 27 27 H 1.09008 * 109.49869 * 299.13312 * 6 4 3 28 28 H 1.09002 * 109.50237 * 59.21159 * 6 4 3 29 29 H 0.97002 * 119.99503 * 180.02562 * 12 11 9 30 30 H 1.09003 * 109.49962 * 177.59579 * 17 7 6 31 31 H 1.08997 * 109.50390 * 297.67422 * 17 7 6 32 32 H 1.08999 * 109.46586 * 180.80053 * 18 17 7 33 33 H 1.08998 * 109.46592 * 60.83401 * 18 17 7 34 34 H 1.00904 * 111.00089 * 302.34180 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9326 0.8528 -0.8425 6 6 4.0798 2.8799 -0.1276 7 6 5.6109 2.8769 -0.1077 8 1 5.9777 3.9022 -0.1543 9 6 6.1285 2.1024 -1.2923 10 1 5.4356 1.6560 -1.9902 11 6 7.4866 1.9627 -1.4846 12 7 8.3304 2.5058 -0.6344 13 14 8.1282 1.0021 -2.9526 14 1 6.9833 0.4951 -3.7510 15 1 8.9665 1.8903 -3.7972 16 1 8.9447 -0.1431 -2.4762 17 6 6.0952 2.2184 1.1871 18 6 5.5270 0.8003 1.2760 19 7 4.0598 0.8572 1.2539 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9564 -0.8899 27 1 3.7290 3.3088 -1.0664 28 1 3.7055 3.4738 0.7062 29 1 9.2858 2.4079 -0.7700 30 1 7.1843 2.1747 1.1878 31 1 5.7538 2.8021 2.0420 32 1 5.8584 0.3337 2.2037 33 1 5.8805 0.2135 0.4282 34 1 3.7055 1.3633 2.0517 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259853201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:08 Heat of formation + Delta-G solvation = -32.737285 kcal Electronic energy + Delta-G solvation = -13229.857518 eV Core-core repulsion = 11161.088527 eV Total energy + Delta-G solvation = -2068.768991 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.28314 -34.55149 -32.64308 -30.38309 -29.92329 -25.88037 -24.96243 -22.15898 -21.31706 -20.16028 -18.94809 -15.96438 -15.04581 -14.84707 -14.35626 -13.57873 -13.47815 -13.12161 -12.85958 -12.15624 -12.02436 -11.85027 -11.42378 -11.08221 -10.82889 -10.77214 -10.55884 -10.38467 -10.22912 -9.99286 -9.82342 -9.69991 -8.99036 -8.74559 -8.42724 -7.28409 -5.97592 -4.02799 3.29423 3.37987 3.41740 4.44510 5.12609 5.23602 5.32977 5.40912 5.51833 5.83608 5.98732 6.06656 6.15071 6.18708 6.34480 6.39602 6.44696 6.55088 6.60643 6.66998 6.78425 6.79897 6.98169 7.12471 7.27761 7.46173 7.67640 7.79756 7.97437 8.20746 8.30195 8.47367 9.00368 9.61262 11.08352 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041543 B = 0.010487 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.832569 B = 2669.351517 C = 2959.411358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.111 4.111 4 C 0.095 3.905 5 H 0.085 0.915 6 C -0.138 4.138 7 C 0.045 3.955 8 H 0.022 0.978 9 C -0.502 4.502 10 H 0.055 0.945 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.886 3.114 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.145 4.145 18 C 0.071 3.929 19 N -0.682 5.682 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.258 0.742 30 H 0.094 0.906 31 H 0.012 0.988 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -2.831 2.307 10.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.149 4.149 4 C -0.015 4.015 5 H 0.103 0.897 6 C -0.177 4.177 7 C 0.026 3.974 8 H 0.040 0.960 9 C -0.540 4.540 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.530 5.530 13 Si 0.714 3.286 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.184 4.184 18 C -0.058 4.058 19 N -0.310 5.310 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.337 -3.486 2.104 10.186 hybrid contribution 0.761 0.578 -0.669 1.167 sum -8.576 -2.908 1.435 9.168 Atomic orbital electron populations 1.21812 0.97187 1.00785 1.01107 1.21432 0.93996 0.97419 1.02597 1.21680 0.96034 0.96392 1.00802 1.21492 0.92054 0.94519 0.93426 0.89690 1.22255 0.99941 0.96324 0.99149 1.18692 0.88665 0.96394 0.93645 0.96027 1.21176 0.91314 1.32888 1.08653 0.92675 1.24956 0.97119 0.95779 0.96173 1.69888 1.02139 1.45044 1.35976 0.86627 0.78967 0.79888 0.83104 1.19809 1.21158 1.21066 1.22166 1.04425 0.95259 0.96550 1.21846 0.85974 0.97648 1.00343 1.60856 1.10209 1.56298 1.03674 0.93248 0.93357 0.93403 0.92578 0.90962 0.92998 0.92492 0.93320 0.95041 0.93180 0.88810 0.96915 0.93725 0.90417 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.15 0.37 -1.42 16 2 C -0.12 -1.66 5.82 -26.73 -0.16 -1.82 16 3 C -0.11 -1.73 4.84 -26.73 -0.13 -1.86 16 4 C 0.10 1.81 2.21 -67.72 -0.15 1.66 16 5 H 0.09 1.84 6.78 -51.93 -0.35 1.48 16 6 C -0.14 -2.88 4.82 -26.65 -0.13 -3.01 16 7 C 0.04 1.11 2.60 -91.65 -0.24 0.87 16 8 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 9 C -0.50 -13.51 6.75 -34.44 -0.23 -13.74 16 10 H 0.06 1.49 6.87 -52.48 -0.36 1.13 16 11 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 12 N -0.89 -25.39 11.33 55.43 0.63 -24.76 16 13 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C -0.14 -3.41 5.40 -26.65 -0.14 -3.55 16 18 C 0.07 1.50 6.35 -3.84 -0.02 1.48 16 19 N -0.68 -12.81 5.96 -106.77 -0.64 -13.44 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 1.08 7.75 -51.93 -0.40 0.68 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.09 2.49 6.05 -51.93 -0.31 2.18 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.84 7.31 -51.93 -0.38 1.46 16 34 H 0.32 5.59 8.79 -39.29 -0.35 5.24 16 LS Contribution 263.57 15.07 3.97 3.97 Total: -1.00 -27.19 263.57 -7.92 -35.11 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.94 Total: 2.68 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.93 Total: -19.83 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.01 Total: -38.20 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.19 -7.92 -35.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.375 kcal (2) G-P(sol) polarization free energy of solvation -27.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds