Wall clock time and date at job start Mon Mar 30 2020 02:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.53004 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.45454 * 54.97070 * 4 3 2 6 6 C 1.53036 * 109.46346 * 174.95092 * 4 3 2 7 7 C 1.53118 * 109.28007 * 179.19722 * 6 4 3 8 8 H 1.08996 * 109.51997 * 182.43867 * 7 6 4 9 9 C 1.50698 * 109.52489 * 62.31214 * 7 6 4 10 10 H 1.08003 * 119.99995 * 359.97438 * 9 7 6 11 11 C 1.37875 * 120.00049 * 180.02562 * 9 7 6 12 12 N 1.31516 * 119.99939 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 120.00007 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46969 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47077 * 119.99467 * 13 11 9 16 16 H 1.48501 * 109.47056 * 239.99401 * 13 11 9 17 17 C 1.53123 * 109.15585 * 302.34276 * 7 6 4 18 18 C 1.53030 * 109.28009 * 57.65675 * 17 7 6 19 19 N 1.46846 * 109.46281 * 295.00274 * 4 3 2 20 20 H 1.09004 * 109.47353 * 299.99666 * 1 2 3 21 21 H 1.09003 * 109.47564 * 59.99810 * 1 2 3 22 22 H 1.09004 * 109.46976 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47353 * 240.00334 * 2 1 3 24 24 H 1.08993 * 109.47556 * 120.00238 * 2 1 3 25 25 H 1.08999 * 109.47142 * 60.00319 * 3 2 1 26 26 H 1.08993 * 109.47407 * 299.99969 * 3 2 1 27 27 H 1.09008 * 109.49869 * 299.13312 * 6 4 3 28 28 H 1.09002 * 109.50237 * 59.21159 * 6 4 3 29 29 H 0.97002 * 119.99503 * 180.02562 * 12 11 9 30 30 H 1.09003 * 109.49962 * 177.59579 * 17 7 6 31 31 H 1.08997 * 109.50390 * 297.67422 * 17 7 6 32 32 H 1.08999 * 109.46586 * 180.80053 * 18 17 7 33 33 H 1.08998 * 109.46592 * 60.83401 * 18 17 7 34 34 H 1.00904 * 111.00089 * 302.34180 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9326 0.8528 -0.8425 6 6 4.0798 2.8799 -0.1276 7 6 5.6109 2.8769 -0.1077 8 1 5.9777 3.9022 -0.1543 9 6 6.1285 2.1024 -1.2923 10 1 5.4356 1.6560 -1.9902 11 6 7.4866 1.9627 -1.4846 12 7 8.3304 2.5058 -0.6344 13 14 8.1282 1.0021 -2.9526 14 1 6.9833 0.4951 -3.7510 15 1 8.9665 1.8903 -3.7972 16 1 8.9447 -0.1431 -2.4762 17 6 6.0952 2.2184 1.1871 18 6 5.5270 0.8003 1.2760 19 7 4.0598 0.8572 1.2539 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9564 -0.8899 27 1 3.7290 3.3088 -1.0664 28 1 3.7055 3.4738 0.7062 29 1 9.2858 2.4079 -0.7700 30 1 7.1843 2.1747 1.1878 31 1 5.7538 2.8021 2.0420 32 1 5.8584 0.3337 2.2037 33 1 5.8805 0.2135 0.4282 34 1 3.7055 1.3633 2.0517 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259853201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:08 Heat of formation + Delta-G solvation = -48.906886 kcal Electronic energy + Delta-G solvation = -13230.558685 eV Core-core repulsion = 11161.088527 eV Total energy + Delta-G solvation = -2069.470157 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.97055 -36.00395 -34.46369 -32.16524 -31.53045 -27.37377 -26.88289 -23.86363 -22.76726 -21.55254 -20.81754 -18.01576 -16.73711 -16.37028 -16.07022 -15.24667 -14.96468 -14.75451 -14.37889 -13.76450 -13.61992 -13.41292 -12.96430 -12.73918 -12.61781 -12.45092 -12.07889 -11.99243 -11.72243 -11.61493 -11.45786 -11.33206 -10.81721 -10.68131 -10.51704 -8.96367 -8.08586 -6.20132 1.36995 1.40001 1.50136 2.42094 3.19292 3.57880 3.96490 4.27325 4.36144 4.40350 4.61556 4.63752 4.69200 4.79040 4.85930 4.89236 5.04385 5.09637 5.16071 5.22275 5.32936 5.38185 5.45876 5.50084 5.56784 5.66616 5.67533 5.83612 6.01873 6.36426 6.43209 6.78580 6.90138 7.46867 8.96449 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.041543 B = 0.010487 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.832569 B = 2669.351517 C = 2959.411358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.103 4.103 4 C 0.101 3.899 5 H 0.056 0.944 6 C -0.131 4.131 7 C 0.037 3.963 8 H -0.017 1.017 9 C -0.510 4.510 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.919 5.919 13 Si 0.945 3.055 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.281 1.281 17 C -0.139 4.139 18 C 0.082 3.918 19 N -0.669 5.669 20 H 0.058 0.942 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.258 0.742 30 H 0.061 0.939 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.130 -3.585 2.533 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.140 4.140 4 C -0.009 4.009 5 H 0.075 0.925 6 C -0.170 4.170 7 C 0.018 3.982 8 H 0.001 0.999 9 C -0.548 4.548 10 H 0.068 0.932 11 C -0.185 4.185 12 N -0.559 5.559 13 Si 0.772 3.228 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.207 1.207 17 C -0.178 4.178 18 C -0.048 4.048 19 N -0.298 5.298 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.027 -4.239 2.335 12.043 hybrid contribution 1.288 0.858 -0.724 1.709 sum -9.740 -3.381 1.611 10.435 Atomic orbital electron populations 1.21757 0.94991 1.01796 1.01826 1.21385 0.95887 0.96109 1.01795 1.21602 0.92863 0.97715 1.01860 1.21407 0.94587 0.92384 0.92539 0.92548 1.22170 0.96925 0.98127 0.99753 1.18709 0.91568 0.93979 0.93916 0.99890 1.21398 0.91475 1.32750 1.09174 0.93175 1.25662 0.97479 0.96750 0.98602 1.70022 1.02267 1.46176 1.37448 0.85692 0.78382 0.78617 0.80139 1.19255 1.20904 1.20686 1.22045 1.02458 0.97029 0.96287 1.21642 0.87407 0.95571 1.00135 1.60806 1.08388 1.56421 1.04189 0.92326 0.92843 0.92330 0.93636 0.91590 0.91454 0.91879 0.93585 0.93357 0.93231 0.92062 0.95528 0.91645 0.93259 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.11 -2.96 5.82 30.59 0.18 -2.79 16 3 C -0.10 -2.92 4.84 30.60 0.15 -2.77 16 4 C 0.10 3.71 2.21 44.94 0.10 3.81 16 5 H 0.06 2.42 6.78 -2.39 -0.02 2.40 16 6 C -0.13 -5.37 4.82 30.65 0.15 -5.22 16 7 C 0.04 1.86 2.60 -11.46 -0.03 1.83 16 8 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 9 C -0.51 -27.90 6.75 25.60 0.17 -27.73 16 10 H 0.05 2.74 6.87 -2.91 -0.02 2.72 16 11 C 0.01 0.73 5.30 84.65 0.45 1.18 16 12 N -0.92 -53.54 11.33 21.45 0.24 -53.30 16 13 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 17 C -0.14 -6.57 5.40 30.65 0.17 -6.40 16 18 C 0.08 3.42 6.35 86.32 0.55 3.97 16 19 N -0.67 -23.85 5.96 -491.70 -2.93 -26.78 16 20 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.07 1.80 7.75 -2.39 -0.02 1.78 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.06 3.32 6.05 -2.39 -0.01 3.31 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.05 2.34 7.31 -2.39 -0.02 2.32 16 34 H 0.34 10.66 8.79 -89.69 -0.79 9.87 16 Total: -1.00 -58.44 263.57 2.19 -56.25 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.26 Total: 14.05 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 2.59 Total: -36.38 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.69 Total: -80.08 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -58.44 2.19 -56.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.339 kcal (2) G-P(sol) polarization free energy of solvation -58.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds