Wall clock time and date at job start Mon Mar 30 2020 01:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00198 * 2 1 4 4 H 1.48508 * 109.47126 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47215 * 119.99875 * 3 2 1 6 6 H 1.48498 * 109.47188 * 240.00391 * 3 2 1 7 7 C 1.37879 * 119.99546 * 180.27913 * 2 1 3 8 8 H 1.08004 * 119.99455 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00331 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47293 * 174.83292 * 9 7 2 11 11 C 1.52999 * 110.01292 * 304.56722 * 10 9 7 12 12 C 1.53004 * 109.47061 * 303.63961 * 11 10 9 13 13 N 1.46900 * 109.47127 * 175.45632 * 12 11 10 14 14 C 1.54271 * 110.03339 * 183.17596 * 10 9 7 15 15 C 1.54961 * 104.15611 * 217.13497 * 14 10 9 16 16 C 1.54883 * 102.78070 * 37.88800 * 15 14 10 17 17 C 1.53872 * 110.03152 * 65.95508 * 10 9 7 18 18 H 0.97003 * 119.99387 * 359.72171 * 1 2 3 19 19 H 1.09003 * 109.47019 * 294.82923 * 9 7 2 20 20 H 1.08995 * 109.47504 * 54.82817 * 9 7 2 21 21 H 1.08993 * 109.47404 * 63.63877 * 11 10 9 22 22 H 1.09004 * 109.47144 * 183.64150 * 11 10 9 23 23 H 1.09004 * 109.46677 * 295.44997 * 12 11 10 24 24 H 1.08997 * 109.47320 * 55.45097 * 12 11 10 25 25 H 1.00896 * 111.00017 * 180.02562 * 13 12 11 26 26 H 1.00905 * 110.99642 * 303.95058 * 13 12 11 27 27 H 1.08999 * 110.48117 * 335.78406 * 14 10 9 28 28 H 1.08996 * 110.48417 * 98.42058 * 14 10 9 29 29 H 1.08998 * 110.72017 * 279.56823 * 15 14 10 30 30 H 1.08999 * 110.91618 * 156.29691 * 15 14 10 31 31 H 1.09001 * 110.48909 * 203.40003 * 16 15 14 32 32 H 1.09003 * 110.48615 * 80.76179 * 16 15 14 33 33 H 1.09004 * 110.03404 * 238.56734 * 17 10 9 34 34 H 1.08994 * 110.03336 * 0.02562 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0054 9 6 1.2510 -2.4991 -0.0116 10 6 2.2400 -3.6586 -0.1473 11 6 3.1048 -3.4659 -1.3947 12 6 2.2038 -3.3301 -2.6238 13 7 3.0271 -3.0369 -3.8045 14 6 1.4771 -4.9966 -0.2346 15 6 2.3627 -5.9903 0.5588 16 6 2.8789 -5.1253 1.7353 17 6 3.1313 -3.7403 1.1044 18 1 -0.4849 0.8401 0.0041 19 1 0.6959 -2.6023 0.9209 20 1 0.5563 -2.5140 -0.8514 21 1 3.7065 -2.5639 -1.2839 22 1 3.7609 -4.3275 -1.5186 23 1 1.6615 -4.2625 -2.7815 24 1 1.4933 -2.5188 -2.4657 25 1 2.4548 -2.9421 -4.6300 26 1 3.5888 -2.2116 -3.6577 27 1 0.4950 -4.9066 0.2295 28 1 1.3817 -5.3142 -1.2729 29 1 3.1920 -6.3424 -0.0548 30 1 1.7725 -6.8297 0.9263 31 1 3.8058 -5.5376 2.1340 32 1 2.1234 -5.0561 2.5180 33 1 4.1799 -3.6437 0.8231 34 1 2.8589 -2.9543 1.8087 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259913214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:38 Heat of formation + Delta-G solvation = -53.419505 kcal Electronic energy + Delta-G solvation = -13292.277018 eV Core-core repulsion = 11222.611178 eV Total energy + Delta-G solvation = -2069.665839 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.14182 -35.78558 -34.92633 -32.33258 -29.69479 -28.80743 -26.84402 -24.45035 -23.04564 -21.11546 -19.23507 -18.12375 -17.06626 -16.52278 -16.24737 -15.93684 -15.11664 -14.72700 -14.40353 -13.85068 -13.54180 -13.34305 -13.17219 -12.80498 -12.43432 -12.31509 -12.03337 -11.81217 -11.67085 -11.59599 -11.28097 -11.06542 -10.75944 -10.62364 -10.48316 -9.50739 -8.14083 -6.20851 1.38013 1.39459 1.46835 2.41814 3.19385 3.71167 3.86578 3.96376 4.15386 4.39465 4.50051 4.64830 4.71571 4.83370 4.91889 4.93599 4.98416 5.03649 5.19445 5.21441 5.31193 5.33246 5.46727 5.54375 5.58973 5.63944 5.76850 5.91115 5.94841 6.26289 6.37115 6.64344 6.94636 7.46233 8.97396 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.012755 C = 0.010537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.728999 B = 2194.614602 C = 2656.784798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.950 3.050 4 H -0.289 1.289 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.045 3.955 10 C -0.055 4.055 11 C -0.077 4.077 12 C 0.066 3.934 13 N -0.849 5.849 14 C -0.120 4.120 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.108 4.108 18 H 0.259 0.741 19 H -0.024 1.024 20 H -0.006 1.006 21 H 0.046 0.954 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.011 0.989 25 H 0.343 0.657 26 H 0.340 0.660 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.919 -8.495 -1.795 10.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.775 3.225 4 H -0.215 1.215 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.077 0.923 9 C 0.008 3.992 10 C -0.055 4.055 11 C -0.115 4.115 12 C -0.065 4.065 13 N -0.378 5.378 14 C -0.157 4.157 15 C -0.150 4.150 16 C -0.158 4.158 17 C -0.145 4.145 18 H 0.067 0.933 19 H -0.006 1.006 20 H 0.012 0.988 21 H 0.065 0.935 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.030 0.970 25 H 0.155 0.845 26 H 0.151 0.849 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.113 -9.092 -1.657 11.080 hybrid contribution -0.706 2.288 0.076 2.395 sum 5.407 -6.804 -1.581 8.834 Atomic orbital electron populations 1.70100 1.07627 1.27201 1.52853 1.25848 0.95527 1.02717 0.95679 0.85732 0.78390 0.79293 0.79042 1.21468 1.19571 1.19257 1.21531 0.93142 0.91734 1.48309 0.92282 1.19089 0.93643 0.92716 0.93747 1.21151 0.95324 0.94481 0.94561 1.21331 0.96976 1.00421 0.92723 1.21769 0.94908 0.99346 0.90458 1.58885 1.28537 1.44923 1.05421 1.22545 0.98101 0.94817 1.00248 1.22446 0.99112 0.96992 0.96459 1.22353 1.01003 0.94721 0.97685 1.22133 0.98749 0.97142 0.96524 0.93267 1.00578 0.98779 0.93513 0.91839 0.91382 0.97035 0.84460 0.84854 0.93574 0.91432 0.90697 0.90600 0.90341 0.92642 0.92220 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.95 44.34 29.54 68.60 2.03 46.36 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.51 -27.94 7.55 25.60 0.19 -27.74 16 8 H 0.06 3.14 6.47 -2.91 -0.02 3.12 16 9 C 0.04 2.32 3.17 29.85 0.09 2.41 16 10 C -0.05 -2.17 0.41 -51.46 -0.02 -2.19 16 11 C -0.08 -2.86 3.88 30.60 0.12 -2.74 16 12 C 0.07 2.42 6.23 86.30 0.54 2.95 16 13 N -0.85 -26.47 9.62 -186.71 -1.80 -28.27 16 14 C -0.12 -4.07 5.74 31.70 0.18 -3.89 16 15 C -0.11 -3.06 6.91 31.91 0.22 -2.84 16 16 C -0.12 -3.53 6.83 31.67 0.22 -3.31 16 17 C -0.11 -3.98 5.63 31.32 0.18 -3.80 16 18 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 19 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 20 H -0.01 -0.34 6.58 -2.39 -0.02 -0.36 16 21 H 0.05 1.90 6.63 -2.39 -0.02 1.89 16 22 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 23 H 0.07 2.34 6.51 -2.38 -0.02 2.33 16 24 H 0.01 0.51 6.20 -2.39 -0.01 0.50 16 25 H 0.34 9.30 9.08 -89.70 -0.81 8.48 16 26 H 0.34 10.48 8.99 -89.69 -0.81 9.68 16 27 H 0.05 1.68 7.85 -2.39 -0.02 1.66 16 28 H 0.07 2.15 6.13 -2.39 -0.01 2.14 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 2.06 7.67 -2.38 -0.02 2.04 16 34 H 0.04 1.75 7.34 -2.39 -0.02 1.74 16 Total: -1.00 -61.76 262.19 2.16 -59.60 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.54 Total: 19.80 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 2.18 Total: -40.75 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.51 Total: -85.02 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -61.76 2.16 -59.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259913214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.185 kcal (2) G-P(sol) polarization free energy of solvation -61.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds